| Complex |
Protein membership in complex |
| VPS35-VPS29-VPS26A complex | VPS29 VPS26A VPS35 |
| NAT complex | MED6 MED14 MED23 MED21 CCNC CDK8 MED10 |
| Gamma-tubulin complex | TUBGCP3 TUBGCP2 TUBGCP4 TUBGCP5 TUBGCP6 TUBG1 |
| KEOPS complex | TPRKB OSGEP TP53RK LAGE3 |
| NFKB1-NFKB2-REL-RELA-RELB complex | NFKB2 REL RELA RELB NFKB1 |
| transcription factor IIIC multisubunit complex | GTF3C3 GTF3C2 GTF3C1 GTF3C5 GTF3C4 |
| MIS18 complex | OIP5 MIS18BP1 MIS18A |
| CTLH complex | RANBP9 MKLN1 MAEA ARMC8 RMND5A |
| 0.8 HOPS complex | VPS41 VPS11 VPS18 VPS33A VPS16 |
| CASK-LIN7C-APBA1 complex | CASK APBA1 LIN7C |
| PA28-20S proteasome | PSMB3 PSME1 PSMA1 PSMB4 PSMB2 PSMA4 PSMB6 PSMA7 PSME2 PSMA3 PSMB7 PSMA5 PSMA6 PSMA2 PSMB5 PSMB1 |
| AP4 adaptor complex | AP4B1 AP4S1 AP4E1 AP4M1 |
| hPRC1L complex | RING1 PHC2 RNF2 BMI1 |
| Sororin-cohesin complex | RAD21 PDS5A PDS5B CDCA5 SMC3 SMC1A |
| COG complex | COG4 COG2 COG7 COG1 COG6 COG3 COG8 COG5 |
| SNAPc (small nuclear RNA-activating protein) complex | SNAPC3 SNAPC2 SNAPC4 SNAPC5 SNAPC1 |
| Casein kinase II (beta-dimer, alpha, alpha') | CSNK2A1 CSNK2A2 CSNK2B |
| 0.9 SMN complex | GEMIN4 GEMIN6 DDX20 GEMIN5 GEMIN2 GEMIN7 |
| GNAI1-GNB1-GNG4 complex | GNB1 GNAI1 GNG4 |
| ESCRT-I complex | VPS28 VPS37C TSG101 |
| GNAI1-GNB4-GNG11 complex | GNG11 GNAI1 GNB4 |
| BLOC-1 (biogenesis of lysosome-related organelles complex 1) | BLOC1S1 BLOC1S5 BLOC1S4 BLOC1S2 SNAPIN DTNBP1 BLOC1S6 BLOC1S3 |
| MeCP1 complex | MTA2 HDAC2 MBD2 MBD3 CHD4 GATAD2B HDAC1 RBBP4 RBBP7 |
| GNAS-L-GNB2-GNG12 complex | GNAS GNG12 GNB2 |
| CCT complex (chaperonin containing TCP1 complex) | CCT8 CCT6A CCT2 CCT7 TCP1 CCT3 CCT5 CCT4 |
| EIF2B1-EIF2B2-EIF2B3-EIF2B4-EIF2B5 complex | EIF2B4 EIF2B3 EIF2B2 EIF2B5 EIF2B1 |
| Paf complex | WDR61 LEO1 CTR9 PAF1 CDC73 |
| RNA polymerase II core complex | POLR2I POLR2H POLR2G POLR2B POLR2J POLR2C POLR2L POLR2K POLR2A POLR2E POLR2F POLR2D |
| SMN complex (GEMIN6,7, UNRIP), SMN-independent intermediate | STRAP GEMIN7 GEMIN6 |
| GLE1-NUPL2-NUP155 complex | GLE1 NUP42 NUP155 |
| 0.8 ING4 complex (ING4, JADE2, KAT7, MEAF6) | ING5 KAT7 MEAF6 JADE2 ING4 |
| KNL1-MIS12-NDC80-SPC24-ZWINT complex | ZWINT NDC80 MIS12 SPC24 KNL1 |
| 0.8 CENP-A NAC complex | CENPU CENPM CENPT CENPH CENPN |
| CNOT1-CNOT2-CNOT3 complex | CNOT2 CNOT3 CNOT1 |
| 0.8 LIN2-LIN7-SAP97-MINT1 complex | CASK APBA1 DLG1 |
| Exocyst complex | EXOC1 EXOC3 EXOC2 EXOC5 EXOC8 EXOC6 EXOC7 EXOC4 |
| TFIIH transcription factor core complex | GTF2H3 ERCC3 GTF2H1 GTF2H2 GTF2H4 |
| Anaphase-promoting complex | ANAPC7 ANAPC5 ANAPC4 CDC16 CDC23 ANAPC2 ANAPC1 ANAPC10 CDC27 |
| GNAI1-GNB1-GNG11 complex | GNB1 GNG11 GNAI1 |
| IMP3-IMP4-MPP10 complex | MPHOSPH10 IMP3 IMP4 |
| WDR20-USP46-UAF1 complex | WDR20 WDR48 USP46 |
| SF3A1-SF3A2-SF3A3 complex | SF3A3 SF3A2 SF3A1 |
| 0.8 Cullin-RING E3 ubiquitin ligase complex | CUL5 ELOB ELOC |
| STAGA core complex | KAT2A TAF9 SUPT3H |
| Ubiquitin E3 ligase (CUL3, KLHL24, RBX1) | CUL3 KLHL24 RBX1 |
| GAA1-GPI8-PIGT-PIG-PIGS complex | PIGT GPAA1 PIGU PIGK PIGS |
| (E.F.G) complex | SNRPE SNRPG SNRPF |
| SMCC complex | MED6 MED14 MED21 MED1 MED24 MED31 CCNC CDK8 |
| 0.7 ORC complex (origin recognition complex) | ORC6 ORC1 ORC5 ORC2 |
| CBF-DNA complex | NFYC NFYA NFYB |
| Wave-2 complex | BRK1 WASF2 NCKAP1 ABI1 CYFIP1 |
| Apoptosis- and splicing-associated protein complex (ASAP-L), SAP18, RNPS1, Acinus-L | ACIN1 SAP18 RNPS1 |
| 0.9 HAUS augmin-like complex | HAUS1 HAUS5 HAUS6 HAUS8 HAUS3 HAUS7 HAUS2 |
| Bag6-Ubl4A-Trc35 Complex | BAG6 UBL4A GET4 |
| TRAP-SMCC mediator complex | MED19 MED22 MED18 MED17 MED1 MED8 MED4 MED11 MED29 MED25 |
| LLGL2-PAR-6B-PRKCI complex | PARD6B PRKCI LLGL2 |
| LSm2-8 complex | LSM2 LSM3 LSM6 LSM7 LSM8 LSM5 LSM4 |
| RING1-Polycomb repressive complex | RING1 CBX4 BMI1 PHC1 |
| Arp2/3 protein complex | ARPC3 ACTR2 ARPC4 ARPC1B ACTR3 ARPC5 ARPC2 |
| 0.8 HDAC1-associated protein complex | MTA2 HDAC2 MBD2 CHD3 GATAD2A KDM1A MBD3 HDAC1 RBBP4 RCOR1 RBBP7 |
| p16-cyclin D2-CDK4 complex | CDK4 CDKN2A CCND2 |
| 0.8 EARP complex | VPS54 VPS50 VPS51 VPS52 VPS53 |
| CORVET complex | VPS8 VPS11 TGFBRAP1 VPS18 VPS33A VPS16 |
| PA700 complex | PSMC5 PSMD1 PSMC3 PSMD5 PSMD6 PSMD13 PSMC2 PSMD8 PSMD14 PSMD2 PSMD12 PSMD11 PSMD9 PSMC6 PSMC1 PSMC4 PSMD7 PSMD10 PSMD4 PSMD3 |
| WDR5-ASH2L-RBBP5-MLL2 complex | KMT2D RBBP5 WDR5 ASH2L |
| GNAI1-GNB4-GNG4 complex | GNAI1 GNB4 GNG4 |
| RBPJ-NOTCH1-MAML1 complex | NOTCH1 MAML1 RBPJ |
| CST complex | TEN1 STN1 CTC1 |
| PRKAA2-PRKAB2-PRKAG1 complex | PRKAB2 PRKAA2 PRKAG1 |
| IKB(alpha)-RELA-cREL complex | NFKBIA RELA REL |
| Respiratory chain complex I (intermediate I/200kD and III/250kD), mitochondrial | NDUFS3 NDUFA9 NDUFS2 |
| 0.8 Intraflagellar transport complex B | IFT20 IFT81 IFT74 IFT80 IFT27 TTC30B TRAF3IP1 IFT57 IFT172 IFT88 IFT22 IFT46 IFT52 |
| KICSTOR complex | C12orf66 KPTN ITFG2 SZT2 |
| 0.8 tRNA Splicing Ligase Complex | RTRAF FAM98B RTCB DDX1 |
| 0.8 PP2A-NR3A complex | PPP2CA PPP2R1A PPP2R2A |
| ArgRS-GlnRS-AIMP1 complex | AIMP1 RARS QARS |
| 0.8 SMRT complex | NCOR1 GPS2 NCOR2 TBL1XR1 TBL1X HDAC3 |
| CDK8 subcomplex (CCNC, CDK8, MED12, MED13) | MED12 MED13 CCNC CDK8 |
| Exocyst EXOC5-EXOC6-EXOC7 subcomplex | EXOC6 EXOC7 EXOC5 |
| 0.8 SNARE complex (VAMP2, SNAP25, STX1a, CPLX1) | SNAP25 STX1A VAMP2 |
| LLGL1-PAR-6B-PRKCI complex | PARD6B PRKCI LLGL1 |
| SNARE complex (VAMP3, STX6, VTI1A) | VAMP3 STX6 VTI1A |
| 0.9 ARC complex | MED6 MED14 MED23 MED17 MED21 MED1 MED15 MED24 MED26 CCNC MED13 MED16 CDK8 MED12 MED25 MED7 |
| SNARE complex (VAMP4, STX6, STX16, VTI1a, VTI1b) | VAMP4 VTI1B STX16 STX6 VTI1A |
| 0.9 Respiratory chain complex I (lambda subunit) mitochondrial | NDUFA13 NDUFA7 NDUFV3 NDUFS8 NDUFA2 NDUFS1 NDUFS4 NDUFA12 NDUFV2 NDUFS3 NDUFS7 NDUFV1 NDUFS6 NDUFA5 NDUFS2 |
| COG2-COG3-COG4 subcomplex | COG3 COG4 COG2 |
| HDAC1-associated core complex cI | HDAC1 RCOR1 KDM1A |
| 0.8 CDH4-HDAC2-MTA2-RBBP7-TWIST1 complex | MTA2 HDAC2 CHD4 RBBP7 |
| TSG101-VPS37B-VPS28 complex | VPS28 TSG101 VPS37B |
| hMediator complex (MED23, CDK8, CCNC, MED7) | MED7 MED23 CCNC CDK8 |
| GNAS-L-GNB1-GNG12 complex | GNB1 GNG12 GNAS |
| CCNC-CDK8-MED1-MED6-MED7 xcomplex | MED6 MED1 CCNC CDK8 MED7 |
| GNAI1-GNB1-GNG10 complex | GNB1 GNG10 GNAI1 |
| COMMD1-CCDC22-CCDC93-C16orf62 complex | COMMD1 VPS35L CCDC93 CCDC22 |
| BHC complex | HDAC2 PHF21A KDM1A HMG20B HDAC1 RCOR1 |
| Ubiquitin E3 ligase (CUL3, KLHL9, KLHL13, RBX1) | CUL3 KLHL13 KLHL9 RBX1 |
| GNAI1-GNB1-GNG5 complex | GNB1 GNAI1 GNG5 |
| IKBA-p50-p65 Nf(kappa)B complex | NFKBIA RELA NFKB1 |
| 0.8 Intraflagellar transport complex B peripheral subcomplex | IFT20 IFT80 TRAF3IP1 IFT57 IFT172 |
| 0.8 Cohesin-SA1 complex | STAG1 RAD21 STAG2 SMC3 SMC1A |
| 0.8 EIF3 complex (EIF3A, EIF3B, EIF3G, EIF3I, EIF3C) | EIF3C EIF3A EIF3B EIF3I EIF3G EIF3J |
| Cullin-RING E3 ubiquitin ligase complex | CUL5 ELOB ASB9 ELOC |
| BORC complex | BLOC1S1 BORCS6 BORCS5 BLOC1S2 SNAPIN KXD1 BORCS8 BORCS7 |
| 0.8 ING4 complex (ING4, JADE1, KAT7, MEAF6) | JADE1 KAT7 JADE3 MEAF6 ING4 |
| PID complex | MTA2 MBD3 CHD4 HDAC1 RBBP4 |
| BMI1-HPH1-HPH2 complex | PHC2 BMI1 PHC1 |
| CAK-ERCC2 complex | CDK7 ERCC2 MNAT1 CCNH |
| GNAI1-GNB1-GNG7 complex | GNB1 GNG7 GNAI1 |
| 0.9 CENP-H-I complex | CENPO CENPP ITGB3BP CENPI CENPU CENPM CENPH CENPK CENPT CENPN CENPL CENPQ |
| IKB(beta)-RELA-cREL complex | NFKBIB RELA REL |
| 0.8 Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26A) | VPS29 VPS35 VPS26B SNX1 SNX2 VPS26A |
| CCC complex | COMMD8 VPS35L COMMD4 COMMD7 COMMD9 CCDC93 CCDC22 COMMD6 COMMD3 COMMD10 COMMD2 COMMD1 COMMD5 |
| MLL1 core complex | RBBP5 KMT2A WDR5 ASH2L |
| Mediator complex | MED23 MED26 MED27 CCNC CDK8 MED10 MED12 MED18 MED15 MED21 MED16 MED29 MED13 MED19 MED22 MED14 MED17 MED30 MED1 MED31 MED20 MED7 MED28 MED13L MED6 CDK19 MED24 MED8 MED4 MED11 MED9 MED25 |
| CRSP complex | MED14 MED23 MED17 MED1 MED24 MED26 MED27 MED7 |
| CRSP-Mediator 2 complex | MED6 MED18 MED14 MED23 MED17 MED15 MED24 MED4 MED16 MED7 |
| PRKAA1-PRKAB2-PRKAG1 complex | PRKAB2 PRKAA1 PRKAG1 |
| CCDC93-COMMD1-COMMD6 complex | COMMD6 COMMD1 CCDC93 |
| NRD complex (Nucleosome remodeling and deacetylation complex) | MTA1 HDAC2 CHD3 KDM1A CHD4 HDAC1 RBBP4 |
| Class C Vps complex (VPS11, VPS18, VPS16) | VPS11 VPS18 VPS16 |
| eIF3 complex (EIF3S6, EIF3S5, EIF3S4, EIF3S3, EIF3S6IP, EIF3S2, EIF3S9, EIF3S12, EIF3S10, EIF3S8, EIF3S1, EIF3S7, PCID1) | EIF3K EIF3C EIF3A EIF3F EIF3B EIF3D EIF3I EIF3M EIF3G EIF3L EIF3E EIF3H EIF3J |
| dysbindin-Snapin-BLOS2 complex | BLOC1S2 SNAPIN DTNBP1 |
| TFIIH transcription factor complex | ERCC2 GTF2H3 CDK7 ERCC3 MNAT1 GTF2H5 CCNH GTF2H1 GTF2H2 GTF2H4 |
| Cell division cycle complex (CDC27, CDC16, ANAPC7) | ANAPC7 CDC27 CDC16 |
| NuRD.1 complex | MTA1 HDAC2 MBD3 CHD4 HDAC1 RBBP4 MTA3 RBBP7 |
| 0.8 SNARE complex (VAMP2, SNAP25, STX1a, CPLX1) match 2 | SNAP25 STX1A VAMP2 |
| 0.8 CCR4-NOT complex | CNOT2 CNOT10 CNOT9 CNOT1 CNOT6L CNOT8 CNOT6 TNKS1BP1 CNOT7 CNOT11 CNOT3 |
| PAR-3-PAR-6B-PRKCI complex | PARD6B PARD3 PRKCI |
| SNARE complex (VAMP3, VAMP4, STX16) | VAMP4 VAMP3 STX16 |
| SNARE complex (VAMP3, VAMP4, VAMP8, STX6) | VAMP4 VAMP3 VAMP8 STX6 |
| 0.8 Cullin-RING E3 ubiquitin ligase complex match 2 | CUL5 ELOB ELOC |
| MED18-MED20-MED29 mediator subcomplex | MED18 MED20 MED29 |
| Telomere-associated protein complex | ACD TERF2IP TERF1 TERF2 TINF2 POT1 |
| Exon junction complex (EIF4A3, MLN51, MAGOH, Y14) | EIF4A3 MAGOH RBM8A CASC3 |
| MPP7-DLG1-LIN7C complex | MPP7 LIN7C DLG1 |
| L-B-P100 subcomplex | FAAP100 FANCL FANCB |
| p27-cyclinE-CDK2 complex | CDK2 CDKN1B CCNE1 |
| ILK-LIMS1-PARVA complex | LIMS1 ILK PARVA |
| AATF-NGDN-NOL10 complex | NOL10 AATF NGDN |
| Elongator core complex | ELP1 ELP3 ELP2 |
| NELF complex (Negative elongation factor complex) | NELFB NELFE NELFA NELFCD |
| pallidin-Cappuccino-BLOS1 complex | BLOC1S1 BLOC1S4 BLOC1S6 |
| 0.9 TREX complex | THOC2 DDX39B THOC3 THOC1 THOC7 THOC5 THOC6 |
| 0.8 PGC-1-SRp40-SRp55-SRp75 complex | SRSF4 SRSF5 SRSF6 |
| L-B-P100 subcomplex match 2 | FAAP100 FANCL FANCB |
| 0.8 BBSome core complex | BBS7 BBS2 BBS9 |
| GINS complex | GINS3 GINS4 GINS1 GINS2 |
| COP9 signalosome complex | COPS7A COPS5 COPS3 COPS6 COPS8 COPS2 COPS4 GPS1 |
| DDX27-PeBoW complex | WDR12 BOP1 PES1 DDX27 |
| 0.8 KATNA1-KATNAL1-KATNB1-KATNBL1 complex | KATNA1 KATNBL1 KATNB1 |
| FHF complex | HOOK3 HOOK2 FAM160A2 HOOK1 AKTIP |
| 0.8 MSL complex | KAT8 MSL1 MSL2 KANSL1 MSL3 |
| 0.7 Oligosaccharyltransferase complex (Stt3B variant) | DDOST RPN1 MAGT1 RPN2 STT3B |
| CDC2-CCNA2-CDK2 complex | CDK2 CDK1 CCNA2 |
| MEP50-PRMT5-ICLN complex | WDR77 CLNS1A PRMT5 |
| Brg1-based SWI/SNF complex | SMARCB1 SMARCC2 SMARCC1 ACTL6A |
| RAD50-MRE11-NBN-p200-p350 complex | RAD50 NBN MRE11 |
| ESCRT-II complex | VPS25 VPS36 SNF8 |
| hASC-1 complex | ASCC1 TRIP4 ASCC3 ASCC2 |
| MCM complex | MCM7 MCM3 MCM6 MCM5 MCM4 MCM2 |
| CAND1-CUL1-RBX1 complex | CUL1 RBX1 CAND1 |
| LAS1L-PELP1-TEX10-WDR18-NOL9-SENP3 complex | TEX10 PELP1 NOL9 LAS1L WDR18 SENP3 |
| AFF4 super elongation complex (SEC) | EAF1 ELL MLLT1 CCNT2 AFF4 ELL2 CCNT1 ELL3 MLLT3 AFF1 CDK9 |
| Prefoldin complex | PFDN5 PFDN2 VBP1 PFDN4 PFDN6 PFDN1 |
| 0.8 RFC complex | RFC4 RFC5 PCNA RFC1 RFC2 RFC3 |
| Ecsit complex (ECSIT, NDUFS3, NDUFAF1) | NDUFS3 ECSIT NDUFAF1 |
| DNA ligase III-XRCC1-PNK-DNA-pol III multiprotein complex | POLB LIG3 PNKP XRCC1 |
| 60S ribosomal subunit, cytoplasmic | RPL37 RPL5 RPL29 UBA52 RPL38 RPL19 RPLP1 RPL30 RPL31 RPL13A RPL14 RPL11 RPL12 RPL10A RPL35A RPL39 RPLP0 RPL21 RPL34 RPL23 RPL18A RPL9 RPL17 RPL8 RPL18 RPL26 RPL13 RPL15 RPL10 RPL7A RPL35 RPL23A RPL24 RPL3 RPL28 RPL36A RPL27 RPLP2 RPL27A RPL37A RPL4 RPL7 RPL32 RPL22 RPL6 RPL36 |
| 0.6 GPR56-CD81-Galpha(q/11)-Gbeta complex | GNB1 GNA11 GNAQ |
| NDC80 kinetochore complex | SPC24 NDC80 SPC25 NUF2 |
| KNTC1-ZW10-ZWILCH complex | ZW10 ZWILCH KNTC1 |
| 0.5 MINOS complex | CHCHD3 IMMT CHCHD6 |
| XPA-ERCC1-ERCC4 complex | ERCC4 XPA ERCC1 |
| 0.8 PBAF complex (Polybromo- and BAF containing complex) | PBRM1 SMARCB1 SMARCD2 SMARCC2 SMARCA4 SMARCE1 ARID1A SMARCD1 SMARCC1 SMARCA2 ARID2 ACTL6A |
| DNA polymerase alpha-primase complex | POLA1 PRIM2 POLA2 PRIM1 |
| PPP3CA-PPP3CA-RCAN1 complex | RCAN1 PPP3CB PPP3CA |
| RPA complex | RPA3 RPA1 RPA2 |
| Condensin II | NCAPD3 NCAPH2 NCAPG2 SMC4 SMC2 |
| ELMO1-DOCK1-CRKII complex | CRK ELMO1 DOCK1 |
| TAK1 complex | TAB2 MAP3K7 TAB1 |
| 0.9 Exosome | DIS3 EXOSC7 EXOSC10 EXOSC1 EXOSC3 DIS3L EXOSC9 EXOSC4 MPHOSPH6 EXOSC6 EXOSC5 EXOSC2 EXOSC8 |
| Isocitrate dehydrogenase [NAD], mitochondrial | IDH3G IDH3B IDH3A |
| NPC subcomplex (NUP98, NUP107, NUP133, NUP160) | NUP133 NUP160 NUP107 NUP98 |
| 0.8 Cleavage and polyadenylation factor (CPSF) | CPSF3 CPSF4 CPSF2 CPSF1 |
| DNA-PK-Ku complex | XRCC5 XRCC6 PRKDC |
| Septin complex | SEPTIN11 SEPTIN2 SEPTIN9 SEPTIN7 SEPTIN8 |
| CTF18-CTF8-DCC1 complex | DSCC1 CHTF8 CHTF18 |
| 0.8 SNARE complex (STX4, VAMP8, VAMP3, SNAP23) | VAMP3 VAMP8 SNAP23 |