| Complex |
Protein membership in complex |
| VPS35-VPS29-VPS26A complex | VPS26A VPS35 VPS29 |
| NAT complex | MED10 SURB7 MED23 CDK8 MED6 CCNC MED14 |
| Gamma-tubulin complex | TUBGCP6 TUBG1 TUBGCP2 TUBGCP4 TUBGCP3 TUBGCP5 |
| KEOPS complex | OSGEP TPRKB TP53RK LAGE3 |
| NFKB1-NFKB2-REL-RELA-RELB complex | RELA RELB NFKB2 REL NFKB1 |
| transcription factor IIIC multisubunit complex | GTF3C3 GTF3C4 GTF3C2 GTF3C5 GTF3C1 |
| MIS18 complex | OIP5 MIS18A MIS18BP1 |
| CTLH complex | MAEA MKLN1 RANBP9 ARMC8 RMND5A |
| 0.8 HOPS complex | VPS11 VPS41 VPS18 VPS33A VPS16 |
| CASK-LIN7C-APBA1 complex | CASK LIN7C APBA1 |
| PA28-20S proteasome | PSMA4 PSME2 PSMB5 PSMB7 PSMB3 PSMA5 PSMB1 HEL-S-129m PSMB2 PSMA6 PSMB4 HEL-S-276 PSMA3 PSMB6 PSMA1 PSMA2 |
| AP4 adaptor complex | hCG_38636 AP4M1 AP4E1 AP4S1 |
| hPRC1L complex | RING1 RNF2 BMI1 PHC2 |
| Sororin-cohesin complex | SMC3 PDS5B PDS5A CDCA5 SMC1L1 RAD21 |
| COG complex | COG6 COG3 COG7 COG2 hCG_2027080 COG4 COG5 COG1 |
| SNAPc (small nuclear RNA-activating protein) complex | SNAPC1 SNAPC3 SNAPC5 SNAPC4 SNAPC2 |
| Casein kinase II (beta-dimer, alpha, alpha') | CSNK2A2 CSNK2B CSNK2A1 |
| 0.9 SMN complex | GEMIN2 GEMIN4 GEMIN6 GEMIN5 DDX20 GEMIN7 |
| GNAI1-GNB1-GNG4 complex | GNAI1 GNB1 GNG4 |
| ESCRT-I complex | TSG101 VPS28 VPS37C |
| GNAI1-GNB4-GNG11 complex | GNG11 GNAI1 GNB4 |
| BLOC-1 (biogenesis of lysosome-related organelles complex 1) | BLOC1S6 BLOC1S5 BLOC1S4 BLOC1S3 SNAPIN BLOC1S1 BLOC1S2 DTNBP1 |
| MeCP1 complex | GATAD2B HDAC1 RBBP7 RBBP4 MBD3 MBD2 HDAC2 CHD4 MTA2 |
| GNAS-L-GNB2-GNG12 complex | GSA GNB2 55970 |
| CCT complex (chaperonin containing TCP1 complex) | CCT3 TCP1 HEL-S-69 CCT6A CCT8 HEL-S-100n CCT7 CCT4 |
| EIF2B1-EIF2B2-EIF2B3-EIF2B4-EIF2B5 complex | EIF2B5 EIF2B4 EIF2B1 EIF2B2 EIF2B3 |
| Paf complex | PAF1 CTR9 WDR61 LEO1 CDC73 |
| RNA polymerase II core complex | POLR2B POLR2L POLR2H POLR2J POLR2G POLR2E POLR2I POLR2C POLR2F POLR2K POLR2A POLR2D |
| SMN complex (GEMIN6,7, UNRIP), SMN-independent intermediate | GEMIN6 GEMIN7 STRAP |
| GLE1-NUPL2-NUP155 complex | NUP42 NUP155 GLE1 |
| 0.8 ING4 complex (ING4, JADE2, KAT7, MEAF6) | ING4 JADE2 KAT7 MEAF6 ING5 |
| KNL1-MIS12-NDC80-SPC24-ZWINT complex | ZWINT KNL1 MIS12 SPC24 KNTC2 |
| 0.8 CENP-A NAC complex | CENPN C22orf18 CENPT CENPU CENPH |
| CNOT1-CNOT2-CNOT3 complex | CNOT3 CNOT1 CNOT2 |
| 0.8 LIN2-LIN7-SAP97-MINT1 complex | CASK DLG1 APBA1 |
| Exocyst complex | DKFZp762K123 EXOC2 DKFZp686P1551 EXOC1 EXOC4 EXOC8 SEC15L3 EXOC5 |
| TFIIH transcription factor core complex | GTF2H3 GTF2H1 GTF2H2 GTF2H4 ERCC3 |
| Anaphase-promoting complex | DKFZp762H177 ANAPC10 CDC27 ANAPC4 ANAPC2 ANAPC5 CDC16 CDC23 ANAPC1 |
| GNAI1-GNB1-GNG11 complex | GNG11 GNAI1 GNB1 |
| IMP3-IMP4-MPP10 complex | MPHOSPH10 IMP4 IMP3 |
| WDR20-USP46-UAF1 complex | WDR48 USP46 DKFZp686P0251 |
| SF3A1-SF3A2-SF3A3 complex | SF3A3 SF3A2 SF3A1 |
| 0.8 Cullin-RING E3 ubiquitin ligase complex | CUL5 TCEB1 ELOB |
| STAGA core complex | SUPT3H TAF9 KAT2A |
| Ubiquitin E3 ligase (CUL3, KLHL24, RBX1) | KLHL24 CUL3 RBX1 |
| GAA1-GPI8-PIGT-PIG-PIGS complex | GPAA1 PIGT PIGS PIGU PIGK |
| (E.F.G) complex | SNRPE SNRPG SNRPF |
| SMCC complex | MED24 SURB7 CDK8 MED31 MED6 MED1 CCNC MED14 |
| 0.7 ORC complex (origin recognition complex) | ORC6L ORC1 ORC2L ORC5L |
| CBF-DNA complex | NFYB NFYC NFYA |
| Wave-2 complex | BRK1 ABI1 CYFIP1 NCKAP1 WASF2 |
| Apoptosis- and splicing-associated protein complex (ASAP-L), SAP18, RNPS1, Acinus-L | SAP18 RNPS1 ACIN1 |
| 0.9 HAUS augmin-like complex | CEP27 HAUS7 HAUS3 HAUS1 HAUS5 HAUS6 HAUS8 |
| Bag6-Ubl4A-Trc35 Complex | UBL4A GET4 BAG6 |
| TRAP-SMCC mediator complex | MED18 MED19 MED8 MED11 MED25 SURF5 MED1 MED29 MED17 MED4 |
| LLGL2-PAR-6B-PRKCI complex | PRKCI LLGL2 PARD6B |
| LSm2-8 complex | LSM5 LSM7 LSM2 LSM8 LSM4 LSM6 LSM3 |
| RING1-Polycomb repressive complex | RING1 CBX4 BMI1 DKFZp686A1782 |
| Arp2/3 protein complex | ARPC2 ARPC5 ARPC1B ACTR3 ARPC4 ACTR2 ARPC3 |
| 0.8 HDAC1-associated protein complex | HDAC1 KDM1A RBBP7 CHD3 RBBP4 MBD3 MBD2 HDAC2 RCOR1 MTA2 GATAD2A |
| p16-cyclin D2-CDK4 complex | CDK4 CDKN2A CCND2 |
| 0.8 EARP complex | VPS53 VPS51 VPS50 VPS52 VPS54 |
| CORVET complex | VPS11 TGFBRAP1 VPS18 VPS33A VPS16 VPS8 |
| PA700 complex | PSMD3 PSMD14 PSMD4 PSMD12 PSMD13 PSMD2 PSMD7 PSMD5 PSMD6 PSMD1 PSMC2 PSMD10 PSMD9 HEL-S-91n PSMC3 PSMC4 PSMC6 PSMD11 PSMC1 PSMC5 |
| WDR5-ASH2L-RBBP5-MLL2 complex | WDR5 RBBP5 KMT2D ASH2L |
| GNAI1-GNB4-GNG4 complex | GNAI1 GNB4 GNG4 |
| RBPJ-NOTCH1-MAML1 complex | MAML1 RBPJ NOTCH1 |
| CST complex | CTC1 TEN1 STN1 |
| PRKAA2-PRKAB2-PRKAG1 complex | PRKAA2 PRKAB2 PRKAG1 |
| IKB(alpha)-RELA-cREL complex | RELA REL NFKBIA |
| Respiratory chain complex I (intermediate I/200kD and III/250kD), mitochondrial | NDUFS3 NDUFS2 NDUFA9 |
| 0.8 Intraflagellar transport complex B | IFT57 TRAF3IP1 IFT74 RABL5 IFT52 IFT80 IFT27 IFT88 IFT20 IFT172 C11orf60 TTC30B IFT81 |
| KICSTOR complex | KICS2 KPTN ITFG2 SZT2 |
| 0.8 tRNA Splicing Ligase Complex | DDX1 C14orf166 FAM98B RTCB |
| 0.8 PP2A-NR3A complex | PPP2R2A PPP2CA PPP2R1A |
| ArgRS-GlnRS-AIMP1 complex | AIMP1 QARS1 RARS1 |
| 0.8 SMRT complex | NCOR2 TBL1XR1 GPS2 HDAC3 TBL1X NCOR1 |
| CDK8 subcomplex (CCNC, CDK8, MED12, MED13) | CCNC THRAP1 CDK8 MED12 |
| Exocyst EXOC5-EXOC6-EXOC7 subcomplex | DKFZp686P1551 SEC15L3 EXOC5 |
| 0.8 SNARE complex (VAMP2, SNAP25, STX1a, CPLX1) | 6616 STX1A VAMP2 |
| LLGL1-PAR-6B-PRKCI complex | PRKCI LLGL1 PARD6B |
| SNARE complex (VAMP3, STX6, VTI1A) | VAMP3 STX6 VTI1A |
| 0.9 ARC complex | MED15 MED24 MED17 SURB7 MED25 MED26 MED23 CDK8 MED12 MED6 CCNC MED1 MED16 THRAP1 CRSP9 MED14 |
| SNARE complex (VAMP4, STX6, STX16, VTI1a, VTI1b) | VAMP4 STX6 VTI1B VTI1A STX16 |
| 0.9 Respiratory chain complex I (lambda subunit) mitochondrial | NDUFV3 NDUFS7 NDUFS6 NDUFS4 NDUFA5 NDUFA13 NDUFA7 NDUFA12 NDUFA2 NDUFV1 NDUFS8 NDUFS3 NDUFS2 NDUFV2 NDUFS1 |
| COG2-COG3-COG4 subcomplex | COG3 COG2 COG4 |
| HDAC1-associated core complex cI | KDM1A RCOR1 HDAC1 |
| 0.8 CDH4-HDAC2-MTA2-RBBP7-TWIST1 complex | RBBP7 HDAC2 CHD4 MTA2 |
| TSG101-VPS37B-VPS28 complex | TSG101 VPS28 VPS37B |
| hMediator complex (MED23, CDK8, CCNC, MED7) | CCNC MED23 CDK8 CRSP9 |
| GNAS-L-GNB1-GNG12 complex | GSA GNB1 55970 |
| CCNC-CDK8-MED1-MED6-MED7 xcomplex | MED1 CDK8 MED6 CCNC CRSP9 |
| GNAI1-GNB1-GNG10 complex | GNAI1 GNB1 hCG_1994888 |
| COMMD1-CCDC22-CCDC93-C16orf62 complex | COMMD1 CCDC93 VPS35L CCDC22 |
| BHC complex | HMG20B HDAC1 KDM1A PHF21A HDAC2 RCOR1 |
| Ubiquitin E3 ligase (CUL3, KLHL9, KLHL13, RBX1) | CUL3 KLHL9 KLHL13 RBX1 |
| GNAI1-GNB1-GNG5 complex | GNAI1 GNG5 GNB1 |
| IKBA-p50-p65 Nf(kappa)B complex | RELA NFKB1 NFKBIA |
| 0.8 Intraflagellar transport complex B peripheral subcomplex | TRAF3IP1 IFT57 IFT80 IFT172 IFT20 |
| 0.8 Cohesin-SA1 complex | SMC3 DKFZp686I05169 STAG1 SMC1L1 RAD21 |
| 0.8 EIF3 complex (EIF3A, EIF3B, EIF3G, EIF3I, EIF3C) | EIF3S9 EIF3S2 EIF3C EIF3S1 EIF3G EIF3A |
| Cullin-RING E3 ubiquitin ligase complex | CUL5 ASB9 TCEB1 ELOB |
| BORC complex | BORCS6 BORCS8 BORCS5 SNAPIN BLOC1S1 MGC2749 BLOC1S2 BORCS7-ASMT |
| 0.8 ING4 complex (ING4, JADE1, KAT7, MEAF6) | ING4 KAT7 JADE1 MEAF6 PHF16 |
| PID complex | HDAC1 RBBP4 MBD3 CHD4 MTA2 |
| BMI1-HPH1-HPH2 complex | DKFZp686A1782 BMI1 PHC2 |
| CAK-ERCC2 complex | CDK7 MNAT1 ERCC2 CCNH |
| GNAI1-GNB1-GNG7 complex | GNAI1 GNG7 GNB1 |
| 0.9 CENP-H-I complex | C1orf155 CENPN CENPO C22orf18 ITGB3BP CENPT CENPQ CENPU CENPH FSHPRH1 CENPK DKFZp779J2459 |
| IKB(beta)-RELA-cREL complex | RELA NFKBIB REL |
| 0.8 Retromer complex (SNX1, SNX2, VPS35, VPS29, VPS26A) | VPS35 VPS29 VPS26B SNX2 VPS26A SNX1 |
| CCC complex | COMMD1 CCDC93 COMMD6 COMMD4 VPS35L COMMD5 COMMD8 COMMD3 COMMD9 COMMD7 COMMD10 COMMD2 CCDC22 |
| MLL1 core complex | WDR5 KMT2A RBBP5 ASH2L |
| Mediator complex | MED10 MED16 MED15 MED14 MED13L MED19 MED24 MED8 MED11 SURF5 MED1 MED29 CCNC THRAP1 MED18 SURB7 MED25 MED26 CDK19 MED23 MED6 CRSP8 MED9 MED4 TRFP MED30 MED28 CDK8 MED31 MED17 CRSP9 MED12 |
| CRSP complex | MED24 MED26 MED23 MED1 MED17 CRSP8 CRSP9 MED14 |
| CRSP-Mediator 2 complex | MED18 MED24 MED17 MED23 MED6 MED16 MED15 CRSP9 MED14 MED4 |
| PRKAA1-PRKAB2-PRKAG1 complex | PRKAB2 PRKAA1 PRKAG1 |
| CCDC93-COMMD1-COMMD6 complex | COMMD1 CCDC93 COMMD6 |
| NRD complex (Nucleosome remodeling and deacetylation complex) | HDAC1 KDM1A CHD3 RBBP4 MTA1 HDAC2 CHD4 |
| Class C Vps complex (VPS11, VPS18, VPS16) | VPS11 VPS18 VPS16 |
| eIF3 complex (EIF3S6, EIF3S5, EIF3S4, EIF3S3, EIF3S6IP, EIF3S2, EIF3S9, EIF3S12, EIF3S10, EIF3S8, EIF3S1, EIF3S7, PCID1) | EIF3S9 EIF3F EIF3K EIF3E EIF3S2 EIF3C EIF3S3 EIF3M EIF3S1 EIF3G EIF3L EIF3A EIF3D |
| dysbindin-Snapin-BLOS2 complex | BLOC1S2 SNAPIN DTNBP1 |
| TFIIH transcription factor complex | MNAT1 CDK7 GTF2H3 GTF2H5 ERCC2 GTF2H1 CCNH GTF2H2 GTF2H4 ERCC3 |
| Cell division cycle complex (CDC27, CDC16, ANAPC7) | DKFZp762H177 CDC27 CDC16 |
| NuRD.1 complex | MTA3 HDAC1 RBBP7 RBBP4 MBD3 MTA1 HDAC2 CHD4 |
| 0.8 SNARE complex (VAMP2, SNAP25, STX1a, CPLX1) match 2 | 6616 STX1A VAMP2 |
| 0.8 CCR4-NOT complex | TNKS1BP1 CNOT6 CNOT2 CNOT1 CNOT6L CNOT9 CNOT10 CNOT11 CNOT7 CNOT3 CNOT8 |
| PAR-3-PAR-6B-PRKCI complex | PRKCI PARD3 PARD6B |
| SNARE complex (VAMP3, VAMP4, STX16) | VAMP3 VAMP4 STX16 |
| SNARE complex (VAMP3, VAMP4, VAMP8, STX6) | VAMP3 VAMP4 STX6 VAMP8 |
| 0.8 Cullin-RING E3 ubiquitin ligase complex match 2 | CUL5 TCEB1 ELOB |
| MED18-MED20-MED29 mediator subcomplex | TRFP MED18 MED29 |
| Telomere-associated protein complex | TERF2IP TERF2 TINF2 POT1 ACD TERF1 |
| Exon junction complex (EIF4A3, MLN51, MAGOH, Y14) | DDX48 MAGOH RBM8 CASC3 |
| MPP7-DLG1-LIN7C complex | LIN7C DLG1 MPP7 |
| L-B-P100 subcomplex | FAAP100 FANCL FANCB |
| p27-cyclinE-CDK2 complex | CDKN1B CDK2 pCCNE1 |
| ILK-LIMS1-PARVA complex | PARVA HEL-S-28 LIMS1 |
| AATF-NGDN-NOL10 complex | AATF NGDN NOL10 |
| Elongator core complex | ELP3 ELP2 ELP1 |
| NELF complex (Negative elongation factor complex) | NELFE NELFA NELFB NELFCD |
| pallidin-Cappuccino-BLOS1 complex | BLOC1S1 BLOC1S6 BLOC1S4 |
| 0.9 TREX complex | NIF3L1BP1 hCG_2005638 hCG_2011153 THOC6 THOC3 THOC2 THOC1 |
| 0.8 PGC-1-SRp40-SRp55-SRp75 complex | SRSF6 SRSF4 SFRS5 |
| L-B-P100 subcomplex match 2 | FAAP100 FANCL FANCB |
| 0.8 BBSome core complex | B1 BBS2 BBS7 |
| GINS complex | GINS2 GINS3 GINS4 GINS1 |
| COP9 signalosome complex | COPS4 COPS5 COPS3 GPS1 COPS8 COPS6 COPS7A COPS2 |
| DDX27-PeBoW complex | DDX27 BOP1 WDR12 PES1 |
| 0.8 KATNA1-KATNAL1-KATNB1-KATNBL1 complex | KATNA1 KATNB1 C15orf29 |
| FHF complex | HOOK3 HOOK1 FHIP1B HOOK2 FTS |
| 0.8 MSL complex | KIAA1267 MSL3 MSL2 MSL1 KAT8 |
| 0.7 Oligosaccharyltransferase complex (Stt3B variant) | MAGT1 RPN2 DDOST STT3B RPN1 |
| CDC2-CCNA2-CDK2 complex | CCNA2 CDC2 CDK2 |
| MEP50-PRMT5-ICLN complex | CLNS1A PRMT5 WDR77 |
| Brg1-based SWI/SNF complex | SMARCC1 SMARCC2 SMARCB1 ACTL6A |
| RAD50-MRE11-NBN-p200-p350 complex | RAD50 NBN MRE11A |
| ESCRT-II complex | VPS25 SNF8 VPS36 |
| hASC-1 complex | TRIP4 ASCC1 ASCC3 ASCC2 |
| MCM complex | MCM3 MCM5 MCM4 MCM6 MCM7 MCM2 |
| CAND1-CUL1-RBX1 complex | CUL1 CAND1 RBX1 |
| LAS1L-PELP1-TEX10-WDR18-NOL9-SENP3 complex | SENP3 LAS1L WDR18 NOL9 PELP1 TEX10 |
| AFF4 super elongation complex (SEC) | CCNT1 AFF4 ELL MLLT3 MLLT1 CDK9 CCNT2 AFF1 DKFZp779C185 EAF1 ELL3 |
| Prefoldin complex | PFDN4 PFDN5 VBP1 PFDN1 PFDN2 PFDN6 |
| 0.8 RFC complex | RFC4 RFC1 RFC3 PCNA RFC5 RFC2 |
| Ecsit complex (ECSIT, NDUFS3, NDUFAF1) | NDUFS3 ECSIT NDUFAF1 |
| DNA ligase III-XRCC1-PNK-DNA-pol III multiprotein complex | PNKP XRCC1 POLB LIG3 |
| 60S ribosomal subunit, cytoplasmic | RPL21 RPL36 RPLP1 RPL32 RPL37A RPL38 RPL36A RPL8 UBA52 RPL37 RPL4 RPL23 RPL3 RPL7 RPLP2 RPL26 RPL10 RPL19 RPL11 RPL9 RPL5 RPL12 RPL28 RPL27 RPL30 RPL35A RPL6 RPL34 RPL15 RPL22 RPL13A RPL10A RPL7A RPL23A RPL29 RPLP0 RPL18A RPL13 RPL31 RPL35 RPL39 HEL-S-310 RPL27A RPL18 hCG_24487 RPL14 |
| 0.6 GPR56-CD81-Galpha(q/11)-Gbeta complex | GNA11 GNB1 GNAQ |
| NDC80 kinetochore complex | NUF2 SPC25 SPC24 KNTC2 |
| KNTC1-ZW10-ZWILCH complex | ZW10 ZWILCH KNTC1 |
| 0.5 MINOS complex | CHCHD3 IMMT CHCHD6 |
| XPA-ERCC1-ERCC4 complex | ERCC1 ERCC4 XPA |
| 0.8 PBAF complex (Polybromo- and BAF containing complex) | ARID2 SMARCA2 SMARCA4 SMARCC2 SMARCD1 PBRM1 ARID1A SMARCB1 ACTL6A SMARCE1 SMARCD2 SMARCC1 |
| DNA polymerase alpha-primase complex | POLA1 POLA2 PRIM2A PRIM1 |
| PPP3CA-PPP3CA-RCAN1 complex | PPP3CB DSCR1 PPP3CA |
| RPA complex | RPA1 RPA3 RPA2 |
| Condensin II | NCAPD3 SMC2L1 SMC4 NCAPG2 NCAPH2 |
| ELMO1-DOCK1-CRKII complex | DOCK1 CRK ELMO1 |
| TAK1 complex | MAP3K7IP1 MAP3K7 TAB2 |
| 0.9 Exosome | EXOSC7 EXOSC2 DIS3L EXOSC9 EXOSC4 MPHOSPH6 EXOSC8 PNAS-3 EXOSC10 EXOSC6 DIS3 EXOSC5 EXOSC1 |
| Isocitrate dehydrogenase [NAD], mitochondrial | IDH3B IDH3G IDH3A |
| NPC subcomplex (NUP98, NUP107, NUP133, NUP160) | NUP160 NUP98 NUP107 NUP133 |
| 0.8 Cleavage and polyadenylation factor (CPSF) | CPSF2 CPSF1 CPSF3 CPSF4 |
| DNA-PK-Ku complex | XRCC6 XRCC5 PRKDC |
| Septin complex | SEPTIN7 SEPTIN8 SEPTIN2 SEPTIN11 SEPTIN9 |
| CTF18-CTF8-DCC1 complex | CHTF8 DSCC1 CHTF18 |
| 0.8 SNARE complex (STX4, VAMP8, VAMP3, SNAP23) | VAMP3 SNAP23 VAMP8 |