| Complex |
Protein membership in complex |
No. of proteins interacting with SARS-COV2 |
No. of interacting SARS-COV2 proteins |
| 28S ribosomal subunit, mitochondrial | 6183 MRPS15 MRPS21 MRPS17 MRPS33 MRPS9 DAP3 MRPS11 MRPS36 MRPS24 MRPS18C MRPS7 MRPS25 MRPS6 MRPS16 MRPS18A MRPS28 MRPS27 MRPS31 MRPS22 MRPS18B MRPS2 MRPS34 MRPS14 MRPS5 MRPS26 MRPS30 MRPS10 MRPS23 | 4 | 1 |
| 55S ribosome, mitochondrial | MRPL11 6183 MRPS33 MRPL9 MRPL52 MRPS24 MRPL27 MRPL21 MRPL13 MRPS2 MRPL38 MRPL42 MRPL54 MRPL24 MRPS18C MRPS30 MRPL1 MRPL23 MRPS11 MRPS36 MRPL18 MRPL16 MRPS25 MRPS6 MRPS16 MRPL3 MRPL53 MRPS28 MRPL30 MRPL50 64979 MRPS22 MRPL41 MRPS18B MRPS34 MRPL10 MRPS5 MRPS26 MRPL55 MRPL37 MRPL19 MRPL51 MRPL47 MRPS15 MRPS17 MRPL4 MRPS9 MRPL46 MRPL17 MRPS7 MRPL45 MRPL15 MRPL12 MRPL40 MRPL14 MRPL48 MRPL2 MRPL33 MRPS21 114294 MRPL32 MRPL43 DAP3 MRPL44 MRPS18A MRPS27 MRPS31 MRPL34 MRPL28 MRPL20 MRPL22 MRPS14 MRPL35 MRPL39 MRPS10 MRPL49 MRPS23 | 4 | 1 |
| Spliceosome | SF3B1 DDX5 BCAS2 SRRM2 DHX16 SF1 LSM3 SF3A2 LSM2 WBP11 SNRPA SRSF9 LSM7 RBM8 LSM6 CIRBP SART1 EFTUD2 SNRPB2 ACIN1 AQR NCBP2 SFRS5 IGF2BP3 CWC22 PRPF3 PAXBP1 DHX38 ZNF207 DDX23 SNW1 PPIL1 CDC5L RBM15 TCERG1 USP39 8559 VIRMA SNRPF XAB2 CWC15 PPIE CTNNBL1 PRPF31 SNRPD3 TRA2B CD2BP2 DHX9 SRRM1 SNRNP200 DDX41 PRPF6 THOC1 SMNDC1 SYF2 PRPF19 SF3A1 PPIL3 CACTIN LSM4 U2SURP WDR57 NIF3L1BP1 DNAJC8 PLRG1 SRSF7 MTREX THOC3 CDC40 SRSF4 DKFZp686A11192 DHX8 THOC2 RBM22 SF3A3 SNRPD2 DDX46 SNRPC MFAP1 U2AF2 PPM1G WTAP DDX17 LUC7L3 TXNL4A ISY1 SNRPA1 hCG_1994066 hCG_2011153 RBM17 TRIR PPIL2 PRPF4B CFAP20 CPSF6 DDX48 SFRS3 DKFZp762M013 PPWD1 RNPS1 PRPF4 MAGOH DDX3X NCBP1 SRSF6 PRPF8 SRSF11 SNRPD1 ALYREF SF3B6 NHP2L1 SNRPG BUD31 RBM25 U2AF1 DKFZp434N041 SNRPE DHX15 SNRPB PPIH SMU1 ESS2 SRSF1 SF3B4 SLU7 NUDT21 CDK12 PABPC1 hCG_2005638 SPEN PUF60 SF3B2 SFRS2 THOC6 HTATSF1 MOV10 SRRT PRPF40A CSA2 SF3B3 BUD13 | 4 | 2 |
| C complex spliceosome | SF3B1 DDX5 SRRM2 LSM3 SF3A2 LSM2 PNN RBM8 DKFZp686A13234 SART1 EFTUD2 SNRPB2 AQR RBMX CWC22 DHX38 DDX23 SNW1 PPIL1 CDC5L SNRPF XAB2 CWC15 PPIE SNRPD3 SRRM1 DDX41 SNRNP200 HNRNPM PRPF6 SYF2 PRPF19 SF3A1 PPIL3 CACTIN HNRPA1 HNRNPA2B1 WDR57 HNRNPC WDR83 SYNCRIP PLRG1 MTREX CDC40 HNRNPH1 DHX8 RBM22 SF3A3 SNRPD2 HNRNPK DHX35 ISY1 SNRPA1 PRPF4B DDX48 DKFZp762M013 PPWD1 RALY HNRNPU MAGOH FRG1 PRPF8 SNRPD1 ALYREF SNRPG HNRPF U2AF1 SNRPE SNRPB CWC27 ESS2 SRSF1 SLU7 PABPC1 ZCCHC8 SF3B2 HNRPA3 GPATCH1 SF3B3 | 4 | 3 |
| Ubiquitin E3 ligase (VHL, TCEB1, TCEB2, CUL2, RBX1) | RBX1 ELOB CUL2 TCEB1 VHL | 3 | 1 |
| KCNQ1 macromolecular complex | AKAP9 3784 PRKAR2A PRKACA PPP1CA | 3 | 1 |
| Exosome | EXOSC4 EXOSC1 PNAS-3 EXOSC9 EXOSC5 EXOSC6 EXOSC7 DIS3 EXOSC2 EXOSC8 | 3 | 1 |
| Exosome | EXOSC4 EXOSC8 EXOSC1 PNAS-3 EXOSC9 EXOSC5 EXOSC6 EXOSC7 DIS3 EXOSC2 EXOSC10 | 3 | 1 |
| DNA synthesome complex (13 subunits) | POLD2 POLA1 POLD3 POLD4 PRIM2A TOP1 PCNA RFC1 POLD1 POLA2 TOP2A RPA1 PRIM1 | 3 | 1 |
| DNA synthesome complex (17 subunits) | POLD2 POLE POLE4 POLA1 POLD3 POLE2 POLD4 PRIM2A TOP1 PCNA RFC1 POLD1 POLA2 TOP2A POLE3 RPA1 PRIM1 | 3 | 1 |
| DNA polymerase alpha-primase complex | POLA1 PRIM2A PRIM1 POLA2 | 3 | 1 |
| DNA synthesome core complex | POLA1 POLD3 POLD4 PRIM2A PCNA RFC1 POLD1 POLA2 POLD2 PRIM1 | 3 | 1 |
| DNA synthesome complex (15 subunits) | POLE POLE4 POLA1 POLD3 POLE2 POLD4 PRIM2A PCNA RFC1 LIG1 POLD1 POLA2 POLD2 POLE3 PRIM1 | 3 | 1 |
| DNA synthesome complex (17 subunits) | POLD2 POLE POLE4 POLA1 POLD3 POLE2 POLD4 PRIM2A TOP1 PCNA RFC1 POLD1 POLA2 TOP2A POLE3 RPA1 PRIM1 | 3 | 1 |
| Nop56p-associated pre-rRNA complex | NOLC1 RPL39 RPS23 RPL36A RPLP0 RPS24 RPL35 RPL15 RPS29 YBX1 GNL3 RPS11 7846 TOP1 RPL7A RPS6 RPS2 RPL22 NOP58 RPS8 RPS13 RPS17 TUFM H1-10 RPL9 SLC25A5 RPS9 72 RPL27 RPL28 DHX9 RPL23A HNRNPM RPS7 DDX21 EEF2 IGF2BP1 RSL1D1 RPLP2 HNRPA1 BRIX1 FBL PWP1 SRPK1 RPL19 RPLP1 RPL3 NAP1L1 RPL31 ILF3 NCL RBM28 RPS14 ILF2 RPL14 RPL7 RPL32 hCG_24487 RPS12 RPL37A MYBBP1A U2AF2 hCG_1994130 RPS18 RPL4 RPL29 ACTA2 RPL23 NOP56 RPL18A LUC7L2 RPL35A H1-3 LYAR HNRNPU RPL21 RPL30 RPS16 RPL11 NHP2L1 RPL27A U2AF1 HEL-S-310 SCYL2 RPL36 RPS15 RPL12 8342 TCOF1 RPL10A EEF1A1 RPL6 NPM1 RPL8 RPL18 RPL13A TUBB1 SRP14 RPL26 EBNA1BP2 RPL13 RPS3A RPL5 RPL10 | 3 | 1 |
| Pericentrin-GCP complex | TUBGCP2 PCNT TUBGCP3 | 3 | 2 |
| AATF-NGDN-NOL10 complex | AATF NGDN NOL10 | 3 | 1 |
| PI4K2A-WASH complex | DOCK7 WASHC2A CAPZB ARHGEF1 CAPZA1 AP3B1 NEDD4 CLTC WASHC4 PI4K2A FKBP15 DNM2 ARHGEF2 WASHC5 | 3 | 2 |
| Exosome | EXOSC4 EXOSC8 EXOSC1 PNAS-3 EXOSC9 EXOSC5 EXOSC6 EXOSC7 MPHOSPH6 EXOSC2 DIS3L EXOSC10 | 3 | 1 |
| PRAME complex | PRAME OSGEP RBX1 LAGE3 CUL2 TCEB1 ELOB | 3 | 1 |
| Ubiquitin E3 ligase (WSB1, TCEB1, TCEB2, CUL5, RBX1) | CUL5 RBX1 WSB1 ELOB TCEB1 | 2 | 1 |
| CAND1-CUL2-RBX1 complex | RBX1 CAND1 CUL2 | 2 | 1 |
| Ubiquitin E3 ligase (VHL, TCEB1, TCEB2, CUL2) | ELOB TCEB1 VHL CUL2 | 2 | 1 |
| TIM (TIM9, TIM10) complex, mitochondrial | TIMM10 TIMM9 | 2 | 1 |
| mRNA decay complex (UPF1, UPF2, UPF3B, DCP2, XRN1, XRN2, EXOSC2, EXOSC4, EXOSC10, PARN) | EXOSC4 DCP2 UPF3B XRN2 XRN1 PARN UPF2 UPF1 EXOSC2 EXOSC10 | 2 | 2 |
| PKA (RII-alpha and RII-beta)-AKAP5-ADRB1 complex | 153 PRKAR2A PRKAR2B AKAP5 | 2 | 1 |
| FACT complex, UV-activated | CSNK2A1 CSNK2A2 SUPT16H CSNK2B SSRP1 | 2 | 1 |
| GAA1-GPI8-PIGT-PIG-PIGS complex | PIGU GPAA1 PIGT PIGK PIGS | 2 | 1 |
| RC complex (Replication competent complex) | CDK2 CCNA2 RFC4 POLA1 RFC1 POLA2 RFC3 RFC2 RFC5 | 2 | 1 |
| Multiprotein complex (mRNA turnover) | PAIP1 PABPC1 CSDE1 SYNCRIP HNRPD | 2 | 2 |
| ITGA9-ITGB1-ADAM9 complex | ADAM9 ITGB1 ITGA9 | 2 | 1 |
| Class C VPS/HOPS complex | EEA1 VPS11 VPS18 VPS39 RAB5A VPS16 | 2 | 1 |
| Ubiquitin E3 ligase (CSN1, CSN8, HRT1, SKP1, SKP2, CUL1, CUL2, CUL3) | CUL3 RBX1 COPS8 SKP2 SKP1 CUL2 CUL1 GPS1 | 2 | 1 |
| Casein kinase II-HMG1 complex | CSNK2B CSNK2A1 CSNK2A2 HMGB1 | 2 | 1 |
| Casein kinase II (beta-dimer, alpha, alpha') | CSNK2B CSNK2A1 CSNK2A2 | 2 | 1 |
| Ecsit complex (ECSIT, MT-CO2, GAPDH, TRAF6, NDUFAF1) | ECSIT HEL-S-162eP NDUFAF1 TRAF6 COX2 | 2 | 1 |
| Ecsit complex (ECSIT, MT-CO2, NDUFA1, MT-ND1, TRAF6, NDUFAF1) | ECSIT MT-ND1 NDUFAF1 ZNF183 TRAF6 COX2 | 2 | 1 |
| Ecsit complex (ECSIT, NDUFS3, NDUFAF1) | NDUFS3 NDUFAF1 ECSIT | 2 | 1 |
| Kinase maturation complex 2 | CDC37 TBKBP1 EL52 HSP90AB1 TBK1 AZI2 TANK TRAF2 | 2 | 1 |
| Casein kinase II (beta-dimer, alpha'-dimer) | CSNK2B CSNK2A2 | 2 | 1 |
| Casein kinase II (beta-dimer, alpha, alpha') | CSNK2B CSNK2A1 CSNK2A2 | 2 | 1 |
| TRBP containing complex (DICER, RPL7A, EIF6, MOV10 and subunits of the 60S ribosomal particle) | RPL11 C15orf15 RPL32 RPL27 RPL14 RPL7 RPL28 RPL36 RPL15 RPL37A RPL12 EIF6 RPL10A RPLP2 DICER1 RPL18A RPL7A RPL34 MOV10 RPL35A RPL19 RPLP1 RPL13 RPL21 RPL30 | 2 | 1 |
| Hook1-Vps39 complex | VPS39 HOOK1 | 2 | 2 |
| GM130-GRASP65 complex | GORASP1 GOLGA2 | 2 | 1 |
| HOPS complex | VPS33A VPS11 VPS41 VPS18 VPS39 VPS16 | 2 | 1 |
| HRD1 complex | SYVN1 hEMMPRIN 51465 HEL-S-125m DERL2 OS9 AUP1 FAM8A1 FAF2 HEL117 ERLIN2 SEL1L HEL-S-89n | 2 | 2 |
| Gamma-tubulin complex | TUBGCP6 TUBGCP2 TUBG1 TUBGCP3 TUBGCP4 TUBGCP5 | 2 | 1 |
| ELN-FBLN5-FBN1 complex | FBLN5 FBN1 2006 | 2 | 1 |
| GNAI1-GNB1-GNG5 complex | GNG5 GNB1 GNAI1 | 2 | 1 |
| GNAS-L-GNB1-GNG5 complex | GSA GNG5 GNB1 | 2 | 1 |
| LAP1-TOR1A complex | TOR1AIP1 TOR1A | 2 | 2 |
| LARP1-PABPC1-RYDEN complex | 55337 LARP1 PABPC1 | 2 | 1 |
| SIN3 complex | SAP30 SAP18 RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| AP3 adaptor complex | AP3M2 AP3M1 AP3S2 AP3B1 AP3S1 AP3D1 AP3B2 | 1 | 1 |
| Mi2/NuRD complex | CHD4 RBBP7 MBD3 HDAC2 RBBP4 HDAC1 MTA2 | 1 | 1 |
| MeCP1 complex | CHD4 RBBP7 MBD3 HDAC2 RBBP4 HDAC1 MTA2 MBD2 | 1 | 1 |
| Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, RBX1) | SKP2 RBX1 SKP1 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (SKP1A, FBXW8, CUL7, RBX1) | RBX1 SKP1 CUL7 FBXW8 | 1 | 1 |
| Nup 107-160 subcomplex | NUP37 NUP160 SEC13 NUP85 SEH1L NUP43 NUP133 NUP98 NUP107 | 1 | 1 |
| RNA polymerase II holoenzyme complex | GTF2H4 POLR2E GTF2F1 GTF2B GTF2H3 GTF2E2 POLR2G ERCC2 ERCC3 GTF2F2 POLR2A POLR2F POLR2I POLR2L POLR2D GTF2H2 POLR2H POLR2K POLR2B TBP GTF2E1 GTF2H1 POLR2C POLR2J | 1 | 1 |
| GPR56-CD81-Galpha(q/11)-Gbeta complex | GNAQ GNB1 GNA11 9289 975 | 1 | 1 |
| TFIIF complex (transcription factor IIF) | GTF2F1 GTF2F2 | 1 | 1 |
| Respiratory chain complex I (holoenzyme), mitochondrial | NDUFS4 NDUFA9 NDUFV3 NDUFB4 NDUFS6 NDUFB10 NDUFV2 4717 NDUFA3 NDUFA2 4537 NDUFA5 4539 NDUFA10 NDUFB5 4541 4697 MT-ND1 NDUFA12 NDUFA13 NDUFS5 NDUFS3 NDUFB8 NDUFA7 MT-ND5 NDUFA8 NDUFB11 NDUFB1 NDUFS2 NDUFS8 NDUFA6 NDUFS1 NDUFB6 NDUFS7 ZNF183 NDUFC2 NDUFV1 4708 NDUFB3 126328 NDUFB7 NDUFB9 4536 NDUFAB1 | 1 | 1 |
| Ubiquitin E3 ligase (ASB2, TCEB1, TCEB2, CUL5, RNF7) | CUL5 RNF7 ELOB TCEB1 ASB2 | 1 | 1 |
| Ubiquitin E3 ligase (ASB1, TCEB1, TCEB2, CUL5, RNF7) | ASB1 CUL5 RNF7 ELOB TCEB1 | 1 | 1 |
| Ubiquitin E3 ligase (ASB6, TCEB1, TCEB2, CUL5, RNF7) | ASB6 CUL5 RNF7 ELOB TCEB1 | 1 | 1 |
| Ubiquitin E3 ligase (ASB7, TCEB1, TCEB2, CUL5, RNF7) | CUL5 RNF7 ELOB TCEB1 ASB7 | 1 | 1 |
| Ubiquitin E3 ligase (ASB12, TCEB1, TCEB2, CUL5, RNF7) | CUL5 142689 RNF7 ELOB TCEB1 | 1 | 1 |
| CAND1-CUL1-RBX1 complex | RBX1 CAND1 CUL1 | 1 | 1 |
| CAND1-CUL3-RBX1 complex | RBX1 CAND1 CUL3 | 1 | 1 |
| CAND1-CUL4A-RBX1 complex | RBX1 CAND1 CUL4A | 1 | 1 |
| CAND1-CUL4B-RBX1 complex | RBX1 CAND1 CUL4B | 1 | 1 |
| SNF2h-cohesin-NuRD complex | CHD3 RBBP7 STAG1 BAZ1A MBD3 SMC1L1 DKFZp686I05169 SMARCA5 HDAC2 MTA1 SMC3 RBBP4 MTA2 HDAC1 MBD2 RAD21 | 1 | 1 |
| Sin3 complex | SAP30 SAP18 RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| Ribosome, cytoplasmic | RPL39 RPS23 RPL36A FAU RPS3 RPLP0 RPS5 HEL112 RPS24 RPL35 6234 RPL15 RPL38 RPS29 RPS19 RPS27 RPS11 RPL7A RPS6 RPS2 RPL22 RPS8 UBA52 RPS13 RPS17 RPL9 RPS9 RPL27 RPS4X RPL28 RPL23A RPS7 RPS4Y1 RPS10 RPLP2 RPSA RPL19 RPLP1 RPL3 RPL31 RPS21 RPS14 RPL14 RPL7 RPL32 hCG_24487 RPS12 RPL37A hCG_1994130 RPS18 RPL4 RPL29 RPL23 RPL18A RPL37 RPL35A RPL21 RPL30 RPS16 RPL11 RPL27A HEL-S-310 RPL36 RPS15 RPL12 RPS26 RPL10A RPL6 6171 RPL8 RPL18 RPL13A RPS25 RPL34 RPL26 RPL13 RPS20 RPS3A RPL5 RPL10 | 1 | 1 |
| 60S ribosomal subunit, cytoplasmic | RPL9 RPL39 RPL36A RPL11 RPLP0 RPL27A RPL14 RPL7 RPL27 RPL35 RPL28 hCG_24487 RPL23A RPL32 HEL-S-310 RPL15 RPL37A RPL12 RPL36 RPL38 RPL10A RPL6 RPL4 RPLP2 RPL29 RPL8 6171 RPL23 RPL13A RPL18 RPL18A RPL37 RPL34 RPL7A RPL35A RPL26 RPL22 RPL19 RPLP1 RPL13 RPL3 RPL5 RPL31 UBA52 RPL21 RPL30 RPL10 | 1 | 1 |
| Ubiquitin E3 ligase (DDB1, CUL4A, RBX1) | RBX1 DDB1 CUL4A | 1 | 1 |
| AKAP5-PRKAR2A-PPP3CA complex | PRKAR2A PPP3CA AKAP5 | 1 | 1 |
| AKAP250-PKA-PDE4D complex | PDE4D AKAP12 PRKACA | 1 | 1 |
| AMY-1-S-AKAP84-RII-beta complex | MYCBP AKAP1 PRKAR2B | 1 | 1 |
| IMP3-IMP4-MPP10 complex | IMP3 MPHOSPH10 IMP4 | 1 | 1 |
| RHOA-IP3R-TRPC1 complex | ITPR1 RHOA 7220 | 1 | 1 |
| F1F0-ATP synthase, mitochondrial | HEL-S-123m ATP5G1 ATP5MF ATP5IF1 ATP5PO ATP5F1C ATP5ME ATP8 hCG_39985 ATP6 ATP5F1E ATP5MG HEL-S-271 ATP5PD ATP5F1D ATP5J | 1 | 1 |
| NuRD.1 complex | CHD4 RBBP7 MBD3 HDAC2 MTA1 RBBP4 HDAC1 MTA3 | 1 | 1 |
| SAP complex (Sin3-associated protein complex) | SAP30 ARID4B RBBP7 HDAC2 RBBP4 HDAC1 SIN3A SAP130 | 1 | 1 |
| SAP complex (Sin3-associated protein complex) | SAP30 ARID4B RBBP7 HDAC2 RBBP4 HDAC1 SIN3A SAP130 SUDS3 | 1 | 1 |
| SIN3-HDAC-SAP30-ARID4 complex | SAP30 ARID4B RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| NRD complex (Nucleosome remodeling and deacetylation complex) | CHD3 CHD4 KDM1A HDAC2 MTA1 RBBP4 HDAC1 | 1 | 1 |
| CoREST-HDAC complex | ZNF217 HMG20B KDM1A HDAC2 HDAC1 PHF21A RCOR1 | 1 | 1 |
| Anti-HDAC2 complex | CHD3 SIN3A CHD4 ZMYM3 RBBP7 HMG20B KDM1A GSE1 MTA1 HDAC2 RBBP4 MTA2 GTF2I HDAC1 PHF21A ZNF198 RCOR1 | 1 | 1 |
| anti-BHC110 complex | ZMYM3 ZNF217 HMG20B KDM1A GSE1 HDAC2 ZNF198 HDAC1 GTF2I PHF21A RCOR1 | 1 | 1 |
| XFIM complex | ZMYM3 KDM1A HDAC2 HDAC1 GTF2I | 1 | 1 |
| BHC complex | HMG20B KDM1A HDAC2 HDAC1 PHF21A RCOR1 | 1 | 1 |
| CtBP complex | ZEB1 CDYL CTBP2 EHMT2 ZNF217 CTBP1 EHMT1 KDM1A RCOR3 HDAC2 RCOR1 HDAC1 ZNF516 LCOR RREB1 ZEB2 CBX4 | 1 | 1 |
| CtBP core complex | ZEB1 CTBP2 CTBP1 EHMT1 KDM1A HDAC2 HDAC1 RCOR1 EHMT2 | 1 | 1 |
| HDAC2-asscociated core complex | CHD3 GATAD2A RBBP7 MBD3 HDAC2 RBBP4 MTA2 | 1 | 1 |
| AP3-BLOC1 complex | AP3M2 AP3M1 AP3S2 AP3B1 AP3S1 BLOC1S2 AP3D1 BLOC1S3 BLOC1S4 SNAPIN AP3B2 BLOC1S6 DTNBP1 BLOC1S5 BLOC1S1 | 1 | 1 |
| MeCP1 complex | CHD4 RBBP7 MBD3 HDAC2 RBBP4 HDAC1 MTA2 MBD2 GATAD2B | 1 | 1 |
| C-CFTR-NHERF-ezrin complex | SLC9A3R1 EZR 1080 | 1 | 1 |
| MeCP1 complex | CHD4 RBBP7 MBD3 HDAC2 RBBP4 HDAC1 MTA2 MBD2 GATAD2B | 1 | 1 |
| CFTR-NHERF-beta(2)AR signaling complex | SLC9A3R1 1080 154 | 1 | 1 |
| SIN3-SAP25 complex | SAP30 ARID4B SAP18 RBBP7 100316904 HDAC2 RBBP4 HDAC1 SIN3A SAP130 SUDS3 | 1 | 1 |
| SIN3-HDAC-SAP30-ARID4 complex | SAP30 ARID4B RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| BRMS1-SIN3-HDAC complex | SIN3B SAP30 RBBP7 HDAC2 BRMS1 RBBP4 HDAC1 SIN3A | 1 | 1 |
| SIN3-HDAC-SAP30-ARID4 complex | SAP30 ARID4B RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| BRG1-SIN3A complex | SMARCD3 SMARCA4 SMARCB1 SMARCD1 ARID1A PRMT5 HDAC2 SMARCC2 SMARCC1 RBBP4 SMARCE1 ACTL6A SIN3A SMARCD2 | 1 | 1 |
| BRM-SIN3A complex | SIN3A SMARCD3 SMARCB1 SMARCD1 ARID1A PRMT5 HDAC2 SMARCC2 SMARCC1 RBBP4 HDAC1 ACTL6A SMARCA2 SMARCE1 SMARCD2 | 1 | 1 |
| DDB2 complex | DDB2 CUL4A COPS7A RBX1 DDB1 COPS3 COPS6 COPS4 COPS8 COPS2 COPS5 GPS1 | 1 | 1 |
| CSA complex | CUL4A ERCC8 COPS7A RBX1 DDB1 COPS3 COPS6 COPS4 COPS8 COPS2 COPS5 GPS1 | 1 | 1 |
| CSA-POLIIa complex | ERCC8 CUL4A COPS7A RBX1 DDB1 COPS3 POLR2A COPS6 COPS4 COPS8 COPS2 COPS5 GPS1 | 1 | 1 |
| Ubiquitin E3 ligase (FBXO31, SKP1A, CUL1, RBX1) | FBXO31 RBX1 SKP1 CUL1 | 1 | 1 |
| SIN3 complex | SAP30 SAP18 RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| SIN3-ING1b complex I | SAP30 ARID4B SAP18 ING1 RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| SIN3-ING1b complex II | SAP30 ARID4B SAP18 ING1 RBBP7 SMARCA4 SMARCB1 SMARCD1 ARID1A HDAC2 SMARCC2 SMARCC1 RBBP4 HDAC1 ACTL6A SIN3A | 1 | 1 |
| SIN3-SAP25 complex | SAP30 ARID4B SAP18 RBBP7 HDAC2 RBBP4 HDAC1 SIN3A 751865 SAP130 SUDS3 | 1 | 1 |
| NCOR-SIN3-RPD3 complex | SIN3A HDAC2 NCOR2 SIN3B | 1 | 1 |
| MeCP2-SIN3A-HDAC complex | MECP2 HDAC2 SIN3A HDAC1 | 1 | 1 |
| LARC complex (LCR-associated remodeling complex) | SMARCA4 PS1TP5BP1 HDAC2 SMARCC1 ACTL6A SMARCD2 CHD4 SMARCB1 MBD2 GATAD2B DPF2 HNRNPC MBD3 ARID1A SMARCE1 SMARCC2 RBBP4 MTA2 HDAC1 | 1 | 1 |
| SMG-1-UPF-ERF1-ERF3 complex (SURF) | ETF1 UPF1 SMG1 GSPT1 | 1 | 1 |
| BRG1-SIN3A-HDAC containing SWI/SNF remodeling complex I | SMARCA4 SMARCB1 SMARCD1 ARID1A PRMT5 HDAC2 SMARCC2 SMARCC1 SMARCE1 ACTL6A SIN3A | 1 | 1 |
| BRM-SIN3A-HDAC complex | SMARCB1 SMARCD1 ARID1A PRMT5 HDAC2 SMARCC2 SMARCC1 SMARCE1 ACTL6A SMARCA2 SIN3A SMARCD2 | 1 | 1 |
| Upf complex (UPF1, UPF2, UPF3a) | UPF3A UPF2 UPF1 | 1 | 1 |
| Upf complex (UPF1, UPF2, UPF3b) | UPF2 UPF3B UPF1 | 1 | 1 |
| Postsplicing complex | RNPS1 UPF3B UPF2 UPF3A UPF1 NXF1 RBM8 | 1 | 1 |
| MRIP-MBS-RHOA complex | PPP1R12A MPRIP RHOA | 1 | 1 |
| MRIP-RHOA complex | MPRIP RHOA | 1 | 1 |
| DNMT1-EHMT2-PCNA complex | PCNA DNMT1 EHMT2 | 1 | 1 |
| DNMT1-EHMT2 complex | DNMT1 EHMT2 | 1 | 1 |
| BRAF53-BRCA2 complex | BRCA2 HMG20B KDM1A HDAC2 HDAC1 PHF21A RCOR1 | 1 | 1 |
| MTA1 complex | RBBP7 MBD3 HDAC2 MTA1 RBBP4 HDAC1 | 1 | 1 |
| MTA2 complex | CHD4 RBBP7 MBD3 HDAC2 RBBP4 HDAC1 MTA2 SIN3A | 1 | 1 |
| MTA1-HDAC core complex | RBBP7 HDAC2 MTA1 RBBP4 HDAC1 | 1 | 1 |
| Toposome | DDX21 HNRNPC PRPF8 TOP2A SSRP1 SRPK1 DHX9 | 1 | 1 |
| FACT-NEK9 complex | SSRP1 SUPT16H NEK9 | 1 | 1 |
| Class C Vps complex (VPS11, VPS18, STX7) | VPS18 VPS11 STX7 | 1 | 1 |
| Class C Vps complex (VPS11, VPS18, VPS16) | VPS11 VPS18 VPS16 | 1 | 1 |
| TorsinA-TorsinB complex | 27348 TOR1A | 1 | 1 |
| RC complex during S-phase of cell cycle | CDK2 CCNA2 POLE POLA1 TOP1 RFC1 LIG1 POLD1 PARP1 RPA1 RFC2 RPA3 RPA2 | 1 | 1 |
| RC complex during G2/M-phase of cell cycle | CCNA2 CCNB1 POLE POLA1 CDC2 TOP1 RFC1 POLD1 PARP1 RPA1 RFC2 RPA3 RPA2 | 1 | 1 |
| Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, RBX1) | SKP2 RBX1 SKP1 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (FBXW11, SKP1A, CUL1, RBX1) | RBX1 SKP1 FBXW11 CUL1 | 1 | 1 |
| Frataxin complex | LYRM4 10939 SDHA ATP5MG HSPD1 2395 HSPA9 | 1 | 1 |
| ATR-HDAC2 complex | HDAC2 ATR | 1 | 1 |
| ATR-HDAC2-CHD4 complex | HDAC2 CHD4 ATR | 1 | 1 |
| Integrator complex | INTS3 INTS9 INTS1 INTS8 CPSF3L INTS5 INTS7 INTS2 INTS12 INTS6 INTS4 INTS10 | 1 | 1 |
| DSS1 complex | INTS9 INTS8 CPSF3L INTS5 BRCA2 INTS2 INTS7 INTS6 7979 LENG8 INTS4 INTS10 | 1 | 1 |
| Integrator-RNAPII complex | INTS3 INTS9 INTS1 CPSF3L INTS8 INTS5 INTS7 INTS2 POLR2A INTS12 INTS6 POLR2B INTS4 INTS10 | 1 | 1 |
| Ubiquitin E3 ligase (DDB1, DDB2, CUL4A, CUL4B, RBX1) | DDB2 CUL4A RBX1 DDB1 CUL4B | 1 | 1 |
| ESCRT-III complex | CHMP4C CHMP5 79643 CHMP4A CHMP2A CHMP1B CHMP1A CHMP3 CHMP4B CHMP2B | 1 | 1 |
| Ubiquitin E3 ligase (AHR, ARNT, DDB1, TBL3, CUL4B, RBX1) | TBL3 RBX1 196 DDB1 ARNT CUL4B | 1 | 1 |
| Ubiquitin E3 ligase (DET1, DDB1, CUL4A, RBX1, COP1) | CUL4A COP1 RBX1 DET1 DDB1 | 1 | 1 |
| Ubiquitin E3 ligase (FBXW7, CUL1, SKP1A, RBX1) | FBXW7 RBX1 SKP1 CUL1 | 1 | 1 |
| H2AX complex, isolated from cells without IR exposure | NPM1 PABPC1 SSB 128312 HEL-S-99n H2AX SUPT16H EIF3L DKFZp686A13234 SSRP1 HEL-S-89n | 1 | 1 |
| CoREST-HDAC2 complex | HDAC2 RCOR1 | 1 | 1 |
| Ubiquitin E3 ligase (FBXW7, CUL1, SKP1A, RBX1) | FBXW7 RBX1 SKP1 CUL1 | 1 | 1 |
| ALL-1 supercomplex | SAP18 KMT2A HDAC2 SMARCC1 SIN3A RBBP5 RAN TAF1 SMARCB1 SMARCA5 CPSF2 TAF6 CHD3 SAP30 SYMPK EFTUD2 RBBP7 KDM1A SMARCA2 TAF12 MBD3 WDR5 SMARCC2 RBBP4 MTA2 HDAC1 TBP TAF9 | 1 | 1 |
| Ubiquitin E3 ligase (GLMN, FBXW8, SKP1A, RBX1) | GLMN RBX1 SKP1 FBXW8 | 1 | 1 |
| Neddylin ligase (FBXO11, SKP1, CUL1, RBX1) | RBX1 SKP1 FBXO11 CUL1 | 1 | 1 |
| DCS complex (PTBP1, PTBP2, HNRPH1, HNRPF) | PTBP1 PTBP2 HNRNPH1 HNRPF | 1 | 1 |
| PABPC1-HSPA8-HNRPD-EIF4G1 complex | PABPC1 EIF4G1 HSPA1B HEL-S-72p HNRPD | 1 | 1 |
| NPC subcomplex (NUP98, NUP107, NUP133, NUP160) | NUP160 NUP133 NUP98 NUP107 | 1 | 1 |
| SNF2h-HDAC12 complex | SMARCA5 HDAC2 | 1 | 1 |
| DNMT1-RB1-HDAC1-E2F1 complex | E2F1 HDAC1 DNMT1 RB1 | 1 | 1 |
| DAXX-DNMT1-DMAP1 complex | DNMT1 DAXX DMAP1 | 1 | 1 |
| RGS6-DNMT1-DMAP1 complex | RGS6 DNMT1 DMAP1 | 1 | 1 |
| BHC110 complex | ZNF217 HMG20B KDM1A GSE1 HDAC2 ZNF198 HDAC1 ZNF516 PHF21A RCOR1 | 1 | 1 |
| NCOR2 complex | SAP30 NCOR1 HDAC2 HDAC1 HDAC3 SIN3A NCOR2 | 1 | 1 |
| GNAS-GNB1-GNG2 complex | GSA GNB1 GNG2 | 1 | 1 |
| G protein complex (MCF2, GNB1, GNG2) | GNG2 GNB1 4168 | 1 | 1 |
| G protein complex (BTK, GNG1, GNG2) | BTK GNB1 GNG2 | 1 | 1 |
| G protein complex (CACNA1A, GNB1, GNG2) | GNB1 GNG2 773 | 1 | 1 |
| G protein complex (PTHR1, GNB1, GNG2) | GNB1 GNG2 PTHR1 | 1 | 1 |
| G protein complex (HDAC5, GNB1, GNG2) | HDAC5 GNB1 GNG2 | 1 | 1 |
| G protein complex (HDAC4, GNB1, GNG2) | HDAC4 GNB1 GNG2 | 1 | 1 |
| TLE1 corepressor complex (MASH1 promoter-corepressor complex) | RAD50 MYH10 NPM1 TLE1 PS1TP5BP1 HSPA4 TOP2B PARP1 NCL NONO | 1 | 1 |
| CPSF6-ITCH-NUDT21-POLR2A-UBAP2L complex | UBAP2L POLR2A CPSF6 ITCH NUDT21 | 1 | 1 |
| CPSF6-EWSR1-ITCH-NUDT21-POLR2A-UBAP2L complex | UBAP2L POLR2A CPSF6 NUDT21 ITCH EWSR1 | 1 | 1 |
| Nogo-potassium channel complex | CNTNAP1 3736 3737 RTN4 | 1 | 1 |
| CHUK-ERC1-IKBKB-IKBKG | ERC1 CHUK IKBKG IKBKB | 1 | 1 |
| Ubiquitin E3 ligase (CDC34, CUL1, RBX1) | RBX1 CDC34 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (CDT1, DDB1, CUL4A, RBX1) | CDT1 RBX1 DDB1 CUL4A | 1 | 1 |
| Ubiquitin E3 ligase (CDC34, NEDD8, BTRC, CUL1, SKP1A, RBX1) | DKFZp781N011 RBX1 SKP1 NEDD8 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (SMAD3, BTRC, CUL1, SKP1A, RBX1) | DKFZp781N011 RBX1 SMAD3 SKP1 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (FBXO18, SKP1A, CUL1, RBX1) | RBX1 SKP1 84893 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (NIPA, SKP1A, CUL1, RBX1) | RBX1 SKP1 ZC3HC1 CUL1 | 1 | 1 |
| BRD4-RFC complex | RFC4 RFC1 BRD4 RFC3 RFC2 RFC5 | 1 | 1 |
| HD-RAB8A-OPTN complex | OPTN RAB8A HTT | 1 | 1 |
| ITGAV-ITGB5-ADAM9 complex | ADAM9 ITGB5 ITGAV | 1 | 1 |
| ITGA5-ITGB1-FN1-TGM2 complex | DKFZp686L11144 ITGB1 ITGA5 7052 | 1 | 1 |
| ITGA5-ITGB1-ADAM15 complex | ITGB1 8751 ITGA5 | 1 | 1 |
| ITGA5-ITGB4 complex | ITGB1 ITGA5 | 1 | 1 |
| CD98-LAT2-ITGB1 complex | ITGB1 23428 6520 | 1 | 1 |
| ITGA7-ITGB1-CD151 complex | ITGA7 977 ITGB1 | 1 | 1 |
| ITGA7-ITGB1-CD9 complex | CD9 ITGA7 ITGB1 | 1 | 1 |
| ITGA7-ITGB1-ITGB1BP3 complex | ITGA7 ITGB1 27231 | 1 | 1 |
| ITGA3-ITGB1-BSG complex | ITGA3 hEMMPRIN ITGB1 | 1 | 1 |
| ITGA3-ITGB1-CD63 complex | CD63 ITGA3 ITGB1 | 1 | 1 |
| ITGA3-ITGB1-CD151 complex | ITGA3 977 ITGB1 | 1 | 1 |
| ITGA3-ITGB1-THBS1 complex | ITGA3 THBS1 ITGB1 | 1 | 1 |
| ITGA3-ITGB1 complex | ITGA3 ITGB1 | 1 | 1 |
| ITGA6-ITGB1-CD151 complex | 977 ITGB1 ITGA6 | 1 | 1 |
| ITGA6-ITGB1 complex | ITGB1 ITGA6 | 1 | 1 |
| ITGB1-RAP1A-PKD1 complex | 5310 RAP1A ITGB1 | 1 | 1 |
| ITGA4-ITGB1-EMILIN1 complex | EMILIN1 ITGA4 ITGB1 | 1 | 1 |
| ITGA4-ITGB1 complex | ITGA4 ITGB1 | 1 | 1 |
| ITGA4-ITGB1-CD81 complex | ITGA4 ITGB1 975 | 1 | 1 |
| ITGA4-ITGB1-CD53 complex | ITGA4 ITGB1 963 | 1 | 1 |
| ITGA4-ITGB1-VCAM1 complex | ITGA4 ITGB1 VCAM1 | 1 | 1 |
| ITGA4-ITGB1-JAM2 complex | ITGA4 58494 ITGB1 | 1 | 1 |
| ITGA4-ITGB1-CD47 complex | CD47 ITGA4 ITGB1 | 1 | 1 |
| ITGA4-ITGB1-CD63 complex | CD63 ITGA4 ITGB1 | 1 | 1 |
| ITGA4-ITGB1-THBS1 complex | ITGA4 THBS1 ITGB1 | 1 | 1 |
| ITGA4-ITGB1-THBS2 complex | ITGA4 ITGB1 THBS2 | 1 | 1 |
| ITGA2-ITGB1-CD47 complex | CD47 ITGB1 ITGA2 | 1 | 1 |
| ITGA2-ITGB1-CHAD complex | CHAD ITGB1 ITGA2 | 1 | 1 |
| ITGA2-ITGB1-COL6A3 complex | 1293 ITGB1 ITGA2 | 1 | 1 |
| ITGA2-ITGB1 complex | ITGB1 ITGA2 | 1 | 1 |
| ITGA1-ITGB1-COL6A3 complex | 1293 ITGB1 ITGA1 | 1 | 1 |
| ITGA1-ITGB1-PTPN2 complex | ITGA1 ITGB1 PTN2 | 1 | 1 |
| ITGAV-ITGB1 complex | ITGB1 ITGAV | 1 | 1 |
| ITGA6-ITGB1-CYR61 complex | 3491 ITGB1 ITGA6 | 1 | 1 |
| ITGA8-ITGB1 complex | 8516 ITGB1 | 1 | 1 |
| ITGA9-ITGB1-VCAM1 complex | ITGA9 ITGB1 VCAM1 | 1 | 1 |
| ITGA9-ITGB1-TNC complex | 3371 ITGB1 ITGA9 | 1 | 1 |
| ITGB1-ITGA9 complex | ITGB1 ITGA9 | 1 | 1 |
| ITGA9-ITGB1-ADAM15 complex | ITGB1 8751 ITGA9 | 1 | 1 |
| ITGA9-ITGB1-FIGF complex | 2277 ITGB1 ITGA9 | 1 | 1 |
| ITGA9-ITGB1-ADAM12 complex | ITGA9 ITGB1 8038 | 1 | 1 |
| BRD4 complex | CCNT1 MED17 MED24 CDK9 BRD4 MED14 MED1 MED12 | 1 | 1 |
| P-TEFb-BRD4-TRAP220 complex | CDK9 CCNT1 BRD4 MED1 | 1 | 1 |
| ESR1-CDK7-CCNH-MNAT1-MTA1-HDAC2 complex | HDAC2 MTA1 2099 MNAT1 CCNH CDK7 | 1 | 1 |
| RNA polymerase II (RNAPII) | POLR2K GTF2F1 POLR2G RPAP1 POLR2E POLR2D POLR2A GTF2F2 POLR2F POLR2I POLR2B POLR2H POLR2L CTDP1 POLR2C GTF2B POLR2J | 1 | 1 |
| HCF-1 complex | ASH2L SIN3B SAP30 RBBP7 SETD1A 6667 OGT EL52 HSPA4 HCFC1 WDR5 RBBP4 HDAC1 HDAC2 SIN3A SUDS3 HEL-S-72p HEL-S-89n | 1 | 1 |
| Ubiquitin E3 ligase (DDB1, CUL4A, RBX1) | RBX1 DDB1 CUL4A | 1 | 1 |
| BRCA1-HDAC1-HDAC2 complex | HDAC2 BRCA1 HDAC1 | 1 | 1 |
| BRCA1-RNA polymerase II complex | GTF2H4 SURB7 POLR2E GTF2F1 GTF2B GTF2H3 GTF2E2 POLR2G ERCC2 ERCC3 GTF2F2 POLR2A POLR2F POLR2I POLR2L POLR2D GTF2H2 POLR2H POLR2K BRCA1 POLR2B TBP GTF2E1 GTF2H1 POLR2C POLR2J | 1 | 1 |
| ITGA5-ITGB1-FN-1-NOV complex | DKFZp686L11144 ITGB1 ITGA5 4856 | 1 | 1 |
| ING2 complex | SAP30 ARID4B RBBP7 ARID4A HDAC2 ING2 BRMS1 RBBP4 HDAC1 BRMS1L SIN3A SAP130 SUDS3 | 1 | 1 |
| ITGA5-ITGB1-CAL4A3 complex | COL18A1 ITGB1 ITGA5 | 1 | 1 |
| BRD4-P-TEFb complex | CDK9 CCNT1 BRD4 | 1 | 1 |
| BRD4-P-TEFb complex | CDK9 CCNT1 BRD4 | 1 | 1 |
| Ubiquitin E3 ligase (BTRC, CUL1, RBX1, SKP1) | DKFZp781N011 RBX1 SKP1 CUL1 | 1 | 1 |
| Respiratory chain complex I (early intermediate NDUFAF1 assembly), mitochondrial | NDUFA9 NDUFA6 MT-ND1 NDUFB6 NDUFS7 NDUFS3 NDUFAF1 | 1 | 1 |
| ITGAV-ITGB1-SPP1 complex | ITGB1 6696 ITGAV | 1 | 1 |
| Respiratory chain complex I (incomplete intermediate ND1, ND2, ND3, CIA30 assembly), mitochondrial | NDUFAF1 4537 MT-ND1 4536 | 1 | 1 |
| Respiratory chain complex I (beta subunit) mitochondrial | NDUFB11 NDUFB1 4708 NDUFB5 NDUFB4 ND4 NDUFB7 NDUFB10 4697 NDUFB6 NDUFC2 NDUFB9 MT-ND5 NDUFAB1 NDUFB8 NDUFB3 | 1 | 1 |
| PTF1-bHLH complex | 256297 TCF12 | 1 | 1 |
| Ecsit complex (ECSIT, NDUFS3, TOM20) | NDUFS3 ECSIT 9804 | 1 | 1 |
| Respiratory chain complex I (incomplete NDUFAF1 assembly), mitochondrial | NDUFAF1 MT-ND1 | 1 | 1 |
| ITGA9-ITGB1-VEGFC complex | ITGB1 7424 ITGA9 | 1 | 1 |
| ITGA9-ITGB1-VEGFA complex | ITGB1 VEGF ITGA9 | 1 | 1 |
| ITGA9-ITGB1-ADAM8 complex | 101 ITGB1 ITGA9 | 1 | 1 |
| p27-cyclinE-Cdk2 - Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, CKS1B, RBX1) complex | CDK2 RBX1 CKS1B CDKN1B SKP1 pCCNE1 SKP2 CUL1 | 1 | 1 |
| LAT2-ITGB1 complex | ITGB1 23428 | 1 | 1 |
| Ubiquitin E3 ligase (SKP1A, SKP2, CUL1, CKS1B, RBX1) | RBX1 CKS1B SKP2 SKP1 CUL1 | 1 | 1 |
| mSin3A complex | RBBP7 HDAC2 RBBP4 HDAC1 SIN3A | 1 | 1 |
| mSin3A-HDAC1-HDAC2 complex | SIN3A HDAC2 HDAC1 | 1 | 1 |
| MAD1-mSin3A-HDAC2 complex | SIN3A MXD1 HDAC2 | 1 | 1 |
| ITGA10-ITGB1 complex | ITGB1 8515 | 1 | 1 |
| ITGA11-ITGB1 complex | 22801 ITGB1 | 1 | 1 |
| ITGA11-ITGB1-COL1A1 complex | 22801 COL1A1 ITGB1 | 1 | 1 |
| ITGB1-NRP1 complex | ITGB1 DKFZp686A03134 | 1 | 1 |
| ITGA9-ITGB1-SPP1 complex | ITGB1 6696 ITGA9 | 1 | 1 |
| ITGA5-ITGB1-SPP1 complex | ITGB1 6696 ITGA5 | 1 | 1 |
| OCT1-OBF1-DNA-TLE1 complex | POU2F1 POU2AF1 TLE1 | 1 | 1 |
| TLE1-TLE2 complex | TLE2 TLE1 | 1 | 1 |
| TLE1 homodimer complex | TLE1 | 1 | 1 |
| TLE-Histone H3 complex | TLE1 | 1 | 1 |
| TLE1 corepressor complex (MASH1 promoter-corepressor complex) | RAD50 NPM1 TLE1 HSPA4 TOP2B PARP1 NCL NONO | 1 | 1 |
| NK-3-Groucho-HIPK2-SIN3A-RbpA48-HDAC1 complex | HIPK2 TLE1 RBBP4 HDAC1 SIN3A NKX3-1 | 1 | 1 |
| NK-3-Groucho complex | NKX3-1 TLE1 | 1 | 1 |
| GNAQ-GEFT-RHOA complex | 115557 RHOA GNAQ | 1 | 1 |
| HESX1-TLE1 complex | 8820 TLE1 | 1 | 1 |
| NCOR-SIN3-HDAC-HESX1 complex | SIN3B 8820 HDAC2 HDAC1 SIN3A NCOR2 | 1 | 1 |
| Ubiquitin E3 ligase (CUL1, RBX1, SKP1) | RBX1 SKP1 CUL1 | 1 | 1 |
| beta(1)-AR receptosome (ADRB1-SAP97-AKAP79-PRKAR2A) | DLG1 153 PRKAR2A AKAP5 | 1 | 1 |
| RBL2 complex (DNMT1, E2F4, E2F5, HDAC1, SUV39H1, RBL2) | SUV39H1 E2F5 DNMT1 HDAC1 RBL2 E2F4 | 1 | 1 |
| Kinase maturation complex 1 | PDRG1 CDC37 YWHAZ MAP3K3 EL52 HSPA4 HSP90AB1 TRAF7 MAP2K5 MARK2 PFDN2 YWHAQ YWHAG YWHAH HEL-S-1 HEL2 | 1 | 1 |
| CHUK-IQGAP2-AKAP8L-RELA-TNIP2 complex | AKAP8L RELA IQGAP2 TNIP2 CHUK | 1 | 1 |
| Casein kinase II (beta-dimer, alpha-dimer) | CSNK2B CSNK2A1 | 1 | 1 |
| VHL-VDU1-TCEB1-TCEB2 complex | ELOB USP33 VHL TCEB1 | 1 | 1 |
| VHL-TCEB1-TCEB2 complex | ELOB VHL TCEB1 | 1 | 1 |
| HIF1A-OS9-EGLN1 complex | OS9 HIF1A EGLN1 | 1 | 1 |
| HIF1A-OS9-EGLN3 complex | OS9 HIF1A 112399 | 1 | 1 |
| TNF-alpha/NF-kappa B signaling complex 10 | CDC37 TXLNA IKBKG FLJ10035 NFKBIB EL52 HSP90AB1 TBK1 CHUK | 1 | 1 |
| TRBP containing complex (DICER, TRBP, AGO2, RPL7A, EIF6, MOV10) | EIF6 AGO2 DICER1 TARBP2 RPL7A MOV10 | 1 | 1 |
| HSP70-BAG5-PARK2 complex | HSPA1B 5071 HSPA4 BAG5 | 1 | 1 |
| TIP5-DNMT-HDAC1 complex | DNMT3B DNMT1 HDAC1 BAZ2A | 1 | 1 |
| FHF complex | FHIP1B FTS HOOK2 HOOK1 HOOK3 | 1 | 1 |
| Hook1-Vps16 complex | HOOK1 VPS16 | 1 | 1 |
| Hook1-Vps18 complex | HOOK1 VPS18 | 1 | 1 |
| Hook1-Vps41 complex | HOOK1 VPS41 | 1 | 1 |
| B-WICH complex | SF3B1 MYO1C DDX21 BAZ1B MYBBP1A SMARCA5 DEK 2074 | 1 | 1 |
| Stargazin-Glu1-mu2 complex | AP2M1 2890 CACNG2 | 1 | 1 |
| Stargazin-Glu2A-mu2 complex | AP2M1 GRIA2 CACNG2 | 1 | 1 |
| AJUBA-GFI1-HDAC2 complex | HDAC2 2672 AJUBA | 1 | 1 |
| MIB complex | MTX2 APOOL MTX1 CHCHD3 SAMM50 125988 IMMT 440574 79135 CHCHD6 DNAJC11 | 1 | 1 |
| Cullin-RING E3 ubiquitin ligase complex | ASB9 CUL5 ELOB TCEB1 | 1 | 1 |
| B-WICH complex | SF3B1 MYO1C 79925 DDX21 MYBBP1A BAZ1B SMARCA5 DEK 2074 | 1 | 1 |
| CTNNB1-DNMT1 complex | CTNNB1 DNMT1 | 1 | 1 |
| TNF-R1-associated signaling complex | RBCK1 TNFRSF1A TNF-alpha IKBKG IKBKB RIPK1 TNIP1 330 MAP3K7IP1 TAB2 RNF31 CHUK MAP3K7 TRADD TRAF2 | 1 | 1 |
| ZNF304-corepressor complex | 57343 DNMT1 SETDB1 TRIM28 | 1 | 1 |
| TNF-R1 signaling complex | TNFRSF1A TNF-alpha RIPK1 TRADD TRAF2 | 1 | 1 |
| MiDAC complex | HDAC2 C14orf43 HDAC1 DNTTIP1 | 1 | 1 |
| CORVET complex | VPS33A VPS11 TGFBRAP1 VPS18 VPS8 VPS16 | 1 | 1 |
| KCTD12-GNB1-GNG2 complex | 115207 GNB1 GNG2 | 1 | 1 |
| KCTD8-GNB1-GNG2 complex | GNB1 GNG2 386617 | 1 | 1 |
| KCTD16-GNB1-GNG2 complex | GNB1 GNG2 57528 | 1 | 1 |
| RIPK1-FADD-caspase-8 complex | RIPK1 FADD hCG_16983 | 1 | 1 |
| DNTTIP1-ZNF541-HDAC1-HDAC2 complex | HDAC2 DNTTIP1 HDAC1 84215 | 1 | 1 |
| WASH complex | 100287171 WASHC3 WASHC2C WASHC4 WASHC5 | 1 | 1 |
| WASH-CAPZalpa/beta complex | 100287171 CAPZB CAPZA1 WASHC3 WASHC2C WASHC4 WASHC5 | 1 | 1 |
| HIF1alpha-VHL-ElonginB-ElonginC complex | ELOB HIF1A VHL TCEB1 | 1 | 1 |
| REEP5-SPG33 complex | ZFYVE27 REEP5 | 1 | 1 |
| CUL4B-DDB1-TLE1 complex | DDB1 CUL4A TLE1 | 1 | 1 |
| CUL4B-DDB1-TLE3 complex | TLE3 CUL4B DDB1 | 1 | 1 |
| 3M complex | TP53 FBXW8 CUL9 RBX1 83987 CUL7 OBSL1 | 1 | 1 |
| CCDC22-COMMD1-CUL2 complex | CCDC22 CUL2 COMMD1 | 1 | 1 |
| ATAC complex, YEATS2-linked | KAT14 UBAP2L POLE4 ZZZ3 KAT2A WDR5 YEATS2 MBIP TADA3L DKFZp666G145 POLE3 SGF29 MAP3K7 TADA2A | 1 | 1 |
| CXCR2-NHERF1-PLC-beta-3 complex | PLCB3 SLC9A3R1 3579 | 1 | 1 |
| GRASP1-GRIP1 complex | GRIPAP1 GRIP1 | 1 | 1 |
| PRAME-Cullin2 ubiquitin ligase complex | PRAME CUL2 | 1 | 1 |
| PRAME-ElonginBC ubiquitin ligase | PRAME ELOB TCEB1 | 1 | 1 |
| TBX20-TLE1 repressor complex | TBX20 TLE1 | 1 | 1 |
| TBX20-TLE3 repressor complex | TLE3 TBX20 | 1 | 1 |
| TBX20-HDAC2 repressor complex | HDAC2 TBX20 | 1 | 1 |
| SLC9A3R1-ACTN4 complex | SLC9A3R1 ACTN4 | 1 | 1 |
| PTEN-NHERF1-EGFR complex | SLC9A3R1 5728 1956 | 1 | 1 |
| NHERF1-PRKCZ complex | SLC9A3R1 PRKCZ | 1 | 1 |
| NHERF1-NPT2A-EZR complex | 6569 SLC9A3R1 EZR | 1 | 1 |
| PDZK1-NHERF1-EZR complex | SLC9A3R1 EZR PDZK1 | 1 | 1 |
| IGF1R-CXCR4-GNAI2-GNB1 complex | 7852 GNB1 GNAI2 IGF1R | 1 | 1 |
| Ubiquitin E3 ligase (FBXO18, SKP1A, CUL1, RBX1) | RBX1 SKP1 84893 CUL1 | 1 | 1 |
| CRBN-DDB1-CUL4A-RBX1 E3 ubiquitin ligase | RBX1 DDB1 CUL4A CRBN | 1 | 1 |
| AUP1-OS9-SEL1L-UBC6e-UBXD8 complex | 51465 SEL1L OS9 FAF2 AUP1 | 1 | 1 |
| v-ATPase-Ragulator-AXIN/LKB1-AMPK complex | PRKAB1 AXIN1 ATP6V1A ATP6V0D1 PRKAG1 STK11 PRKAA1 ATP6V1B2 LAMTOR1 LAMTOR3 LAMTOR2 LAMTOR5 LAMTOR4 ATP6V0C | 1 | 1 |
| Ubiquitin E3 ligase (CUL1, FBXO6, RBX1, SKP1) | FBXO6 RBX1 SKP1 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (CUL1, FBXO17, RBX1, SKP1) | RBX1 SKP1 FBXO17 CUL1 | 1 | 1 |
| Ubiquitin E3 ligase (CUL1, FBXO27, RBX1, SKP1) | RBX1 SKP1 CUL1 FBXO27 | 1 | 1 |
| Ubiquitin E3 ligase (CUL1, FBXO44, RBX1, SKP1) | FBXO44 RBX1 SKP1 CUL1 | 1 | 1 |
| ELN-FBLN2-FBN1 complex | FBN1 2199 2006 | 1 | 1 |
| NG2-galectin-3-alpha3beta1-integrin complex | ITGA3 hCG_22119 ITGB1 CSPG4 | 1 | 1 |
| ADIPOQ-PLOD3-GLT25D1 complex | 9370 COLGALT1 DKFZp564O1822 | 1 | 1 |
| SEPHS1-SEPHS2-SEPSECS-SECp43 complex | SEPHS1 SEPSECS 71787 SEPHS2 | 1 | 1 |
| PLOD2-FKBP10 complex | DKFZp666D193 PLOD2 | 1 | 1 |
| ITGB1-RACK1 complex | RACK1 ITGB1 | 1 | 1 |
| GNAI1-GNGT1-GNB1 complex | 2792 GNB1 GNAI1 | 1 | 1 |
| GNAI1-GNB1-GNG2 complex | GNB1 GNG2 GNAI1 | 1 | 1 |
| GNAI1-GNB1-GNG3 complex | GNG3 GNB1 GNAI1 | 1 | 1 |
| DCP1A-NR3C1-PNRC2-UPF1-complex | 55629 NR3C1 UPF1 DCP1A | 1 | 1 |
| GNAI1-GNB1-GNG4 complex | GNG4 GNB1 GNAI1 | 1 | 1 |
| GNAI1-GNB2-GNG5 complex | GNB2 GNG5 GNAI1 | 1 | 1 |
| GNAI1-GNB3-GNG5 complex | GNG5 GNAI1 GNB3 | 1 | 1 |
| GNAI1-GNB4-GNG5 complex | GNG5 GNAI1 GNB4 | 1 | 1 |
| GNAI1-GNB5-GNG5 complex | GNB5 GNG5 GNAI1 | 1 | 1 |
| GNAI1-GNB1-GNG7 complex | GNAI1 GNB1 GNG7 | 1 | 1 |
| GNAI1-GNB1-GNG8 complex | GNB1 GNAI1 94235 | 1 | 1 |
| GNAI1-GNB1-GNG10 complex | GNAI1 GNB1 hCG_1994888 | 1 | 1 |
| GNAI1-GNB1-GNG11 complex | GNB1 GNAI1 GNG11 | 1 | 1 |
| GNAI1-GNB1-GNG12 complex | GNB1 GNAI1 | 1 | 1 |
| GNAI1-GNB1-GNG13 complex | 51764 GNB1 GNAI1 | 1 | 1 |
| GNAS-L-GNB1-GNG1 complex | GSA GNB1 2792 | 1 | 1 |
| HSPA9-GRPEL1-GRPEL2 complex | GRPEL2 GRPEL1 HSPA9 | 1 | 1 |
| GRPEL1-GRPEL2 complex | GRPEL2 GRPEL1 | 1 | 1 |
| HSPA9-GRPEL1 complex | GRPEL1 HSPA9 | 1 | 1 |
| HSPA9-GRPEL1-GRPEL2-TIMM44 complex | GRPEL2 GRPEL1 TIMM44 HSPA9 | 1 | 1 |
| GSKIP-GSK3B-PRKAR2A complex | 51527 PRKAR2A GSK3B | 1 | 1 |
| GSKIP-GSK3B-PRKAR2A complex | 51527 PRKAR2A GSK3B | 1 | 1 |
| GSKIP-PRKAR2B complex | 51527 PRKAR2B | 1 | 1 |
| PRKAR2A-GSKIP-GSK3B-DNM1L complex | DNM1L 51527 PRKAR2A GSK3B | 1 | 1 |
| GNAS-L-GNB1-GNG2 complex | GSA GNB1 GNG2 | 1 | 1 |
| GNAS-L-GNB1-GNG3 complex | GSA GNB1 GNG3 | 1 | 1 |
| GNAS-L-GNB1-GNG4 complex | GSA GNG4 GNB1 | 1 | 1 |
| GNAS-L-GNB2-GNG5 complex | GNB2 GSA GNG5 | 1 | 1 |
| GNAS-L-GNB3-GNG5 complex | GSA GNG5 GNB3 | 1 | 1 |
| GNAS-L-GNB4-GNG5 complex | GSA GNG5 GNB4 | 1 | 1 |
| GNAS-L-GNB5-GNG5 complex | GNB5 GSA GNG5 | 1 | 1 |
| GNAS-L-GNB1-GNG7 complex | GSA GNB1 GNG7 | 1 | 1 |
| GNAS-L-GNB1-GNG8 complex | GSA GNB1 94235 | 1 | 1 |
| GNAS-L-GNB1-GNG10 complex | GSA GNB1 hCG_1994888 | 1 | 1 |
| Methionine adenosyltransferase alpha2 beta-v1 | MAT2B MAT2A | 1 | 1 |
| GNAS-L-GNB1-GNG11 complex | GSA GNB1 GNG11 | 1 | 1 |
| Methionine adenosyltransferase alpha1 beta-v1 | MAT1A MAT2B | 1 | 1 |
| GNAS-L-GNB1-GNG12 complex | GSA GNB1 55970 | 1 | 1 |
| GNAS-L-GNB1-GNG13 complex | 51764 GSA GNB1 | 1 | 1 |
| CDH4-HDAC2-MTA2-RBBP7-TWIST1 complex | CHD4 RBBP7 TWIST1 HDAC2 MTA2 | 1 | 1 |
| MLC1-Na,K-ATPase-Kir4.1-AQP4-TRPV4-syntrophin complex | 59341 54212 KCNJ10 ATP1B1 361 | 1 | 1 |
| HEPACAM-MLC1-Na,K-ATPase-Kir4.1-AQP4-TRPV4 complex | 59341 HEPACAM KCNJ10 ATP1B1 361 | 1 | 1 |
| BIN1-EHBP1-RAB8A complex | BIN1 RAB8A EHBP1 | 1 | 1 |
| HINT1-UBC3-RBX1 complex | RBX1 HINT1 CDC34 | 1 | 1 |
| RAC1-RHOA-VANGL2 complex | RAC1 RHOA VANGL2 | 1 | 1 |
| IL-15-lactadherin complex | MFGE8 3600 | 1 | 1 |
| TRIM25-G3BP2 complex | TRIM25 G3BP2 | 1 | 1 |
| Ubiquitin E3 ligase (CUL3, KEAP1, RBX1) | RBX1 CUL3 9817 | 1 | 1 |
| DCS complex | PTBP1 PTBP2 KHSRP HNRNPH1 | 1 | 1 |
| TMEM173-TBK1 complex | TBK1 STING1 | 1 | 1 |
| HOOK1-SHP2 complex | PTPN11 HOOK1 | 1 | 1 |
| HOOK2-PCM1-RAB8A complex | HOOK2 RAB8A PCM1 | 1 | 1 |
| Ubiquitin E3 ligase (CUL3, KLHL7, RBX1) | RBX1 CUL3 KLHL7 | 1 | 1 |
| Ubiquitin E3 ligase (CUL3, KLHL9, KLHL13, RBX1) | KLHL13 RBX1 CUL3 KLHL9 | 1 | 1 |
| Ubiquitin E3 ligase (CUL3, KLHL20, RBX1) | KLHL20 RBX1 CUL3 | 1 | 1 |
| Ubiquitin E3 ligase (CUL3, KLHL24, RBX1) | KLHL24 RBX1 CUL3 | 1 | 1 |
| 7SK RNP complex | CDK9 CCNT1 LARP7 HEXIM1 | 1 | 1 |
| VHL-ElonginB-ElonginC complex | ELOB VHL TCEB1 | 1 | 1 |